science/arbor 0.12.2 FreeBSD
Multi-compartment neural network simulation library
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
229b2942d6- License
- BSD3CLAUSE
- Categories
- science
- Package size
- 1262.9 KiB, 4690.5 KiB installed
Description
Arbor is a multi-compartment neuron simulation library; compatible with next-generation accelerators; best-practices applied to research software; focussed on community-driven development.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | science/arbor | 0.12.2 |
| DragonFly | science/arbor | 0.8.1 |
Install
Binary package:
pkg install arborFrom the ports tree:
cd /usr/ports/science/arbor/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= arbor>0:science/arbor
LIB_DEPENDS= libarbor.so:science/arborPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 0.12.2 | 0.12.2 | - | - | 0.12.2 |
| FreeBSD:14:quarterly | 0.12.2 | 0.12.2 | n/a | - | 0.12.2 |
| FreeBSD:15:latest | 0.12.2 | 0.12.2 | n/a | - | - |
| FreeBSD:15:quarterly | 0.12.2 | 0.12.2 | n/a | n/a | n/a |
| FreeBSD:16:latest | 0.12.2 | 0.12.2 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Build 7
bash: shells/bash${LOCALBASE}/lib/cmake/GTest/GTestConfig.cmake: devel/googletestlibfmt>=12.1.0: devel/libfmtnlohmann-json>=3.12.0: devel/nlohmann-jsonrandom123>=1.14.0: devel/random123${PYTHON_PKGNAMEPREFIX}svgwrite>=1.4.3: graphics/py-svgwritetinyopt>=1.0.8: devel/tinyopt
Library 3
libhwloc.so: devel/hwloc2libpugixml.so: textproc/pugixmllibunits.so: misc/units
Runtime 1
${PYTHON_PKGNAMEPREFIX}svgwrite>=1.4.3: graphics/py-svgwrite
Test 1
googletest>=1.16.0: devel/googletest
The full lists below include those, and their dependencies in turn.
Build dependencies 30
- devel/cmake-core
- devel/gettext-runtime
- devel/googletest
- devel/hwloc2
- devel/jsoncpp
- devel/level-zero
- devel/libffi
- devel/libfmt
- devel/libpciaccess
- devel/libunistring
- devel/libuv
- devel/ninja
- devel/nlohmann-json
- devel/pkgconf
- devel/random123
- devel/readline
- devel/tinyopt
- dns/libidn2
- graphics/py-svgwrite
- lang/python312
- math/mpdecimal
- misc/hwdata
- misc/units
- ports-mgmt/pkg
- print/indexinfo
- security/rhash
- shells/bash
- textproc/expat2
- textproc/libxml2
- textproc/pugixml
Run dependencies 15
Required by 1
Configuration
Options name: science_arbor
| Option | Default | Description |
|---|---|---|
| NATIVE | off | Use native optimization (-march=native) |
- USES
- cmake compiler:c++20-lang localbase pkgconfig python shebangfix
- Service scripts
- none
Files
pkg-plist 122
- bin/arbor-build-catalogue
- bin/lmorpho
- bin/modcc
- include/arbor/adex_cell.hpp
- include/arbor/arb_types.h
- include/arbor/arb_types.hpp
- include/arbor/arb_types.inc
- include/arbor/arbexcept.hpp
- include/arbor/assert.hpp
- include/arbor/assert_macro.hpp
- include/arbor/benchmark_cell.hpp
- include/arbor/cable_cell.hpp
- include/arbor/cable_cell_param.hpp
- include/arbor/common_types.hpp
- include/arbor/communication/mpi_error.hpp
- include/arbor/communication/remote.hpp
- include/arbor/constants.hpp
- include/arbor/context.hpp
- include/arbor/cv_policy.hpp
- include/arbor/domain_decomposition.hpp
- include/arbor/domdecexcept.hpp
- include/arbor/event_generator.hpp
- include/arbor/export.hpp
- include/arbor/fvm_types.hpp
- include/arbor/gpu/cuda_api.hpp
- include/arbor/gpu/gpu_api.hpp
- include/arbor/gpu/gpu_common.hpp
- include/arbor/gpu/hip_api.hpp
- include/arbor/gpu/math_cu.hpp
- include/arbor/gpu/reduce_by_key.hpp
- include/arbor/iexpr.hpp
- include/arbor/lif_cell.hpp
- include/arbor/load_balance.hpp
- include/arbor/math.hpp
- include/arbor/mechanism.hpp
- include/arbor/mechanism_abi.h
- include/arbor/mechcat.hpp
- include/arbor/mechinfo.hpp
- include/arbor/morph/cv_data.hpp
- include/arbor/morph/embed_pwlin.hpp
- include/arbor/morph/isometry.hpp
- include/arbor/morph/label_dict.hpp
- include/arbor/morph/locset.hpp
- include/arbor/morph/mcable_map.hpp
- include/arbor/morph/morphexcept.hpp
- include/arbor/morph/morphology.hpp
- include/arbor/morph/mprovider.hpp
- include/arbor/morph/place_pwlin.hpp
- include/arbor/morph/primitives.hpp
- include/arbor/morph/region.hpp
- include/arbor/morph/segment_tree.hpp
- include/arbor/morph/stitch.hpp
- include/arbor/network.hpp
- include/arbor/network_generation.hpp
- include/arbor/profile/meter.hpp
- include/arbor/profile/meter_manager.hpp
- include/arbor/profile/profiler.hpp
- include/arbor/profile/timer.hpp
- include/arbor/recipe.hpp
- include/arbor/s_expr.hpp
- include/arbor/sampling.hpp
- include/arbor/schedule.hpp
- include/arbor/serdes.hpp
- include/arbor/simd/approx.hpp
- include/arbor/simd/avx.hpp
- include/arbor/simd/avx512.hpp
- include/arbor/simd/generic.hpp
- include/arbor/simd/implbase.hpp
- include/arbor/simd/native.hpp
- include/arbor/simd/neon.hpp
- include/arbor/simd/simd.hpp
- include/arbor/simd/simd_io.hpp
- include/arbor/simd/sve.hpp
- include/arbor/simd/sve_bits.hpp
- include/arbor/simd/vls_sve.hpp
- include/arbor/simd/vls_sve_bits.hpp
- include/arbor/simple_sampler.hpp
- include/arbor/simulation.hpp
- include/arbor/spike.hpp
- include/arbor/spike_event.hpp
- include/arbor/spike_source_cell.hpp
- include/arbor/symmetric_recipe.hpp
- include/arbor/units.hpp
- include/arbor/util/any_cast.hpp
- include/arbor/util/any_ptr.hpp
- include/arbor/util/any_visitor.hpp
- include/arbor/util/compat.hpp
- include/arbor/util/expected.hpp
- include/arbor/util/extra_traits.hpp
- include/arbor/util/handle_set.hpp
- include/arbor/util/hash_def.hpp
- include/arbor/util/pp_util.hpp
- include/arbor/util/scope_exit.hpp
- include/arbor/util/uninitialized.hpp
- include/arbor/util/unique_any.hpp
- include/arbor/util/visibility.hpp
- include/arbor/version.hpp
- include/arborenv/arbenvexcept.hpp
- include/arborenv/concurrency.hpp
- include/arborenv/default_env.hpp
The first 100 are listed.
distinfo 3
| File | Size | SHA256 |
|---|---|---|
| arbor-sim-arbor-v0.12.2_GH0.tar.gz | 1.2968355e+07 | be51d13ec5308c337e592643c4cade21b27fa3bfee3467d1542ee80cd62261a8 |
| cpm-cmake-CPM.cmake-v0.39.0_GH0.tar.gz | 100981 | 621cfca03a5a0fcf316f08aee37d775a71620879e768ebf74be8495773f6b578 |
| martinus-unordered_dense-v4.5.0_GH0.tar.gz | 901624 | 2364ce4bc4c23bd02549bbb3a7572d881684cd46057f3737fd53be53669743aa |