science 623 ports
Scientific ports that fit into no other category
| Port | Version | Repository | Comment |
|---|---|---|---|
| astro/p5-Astro-Constants | 0.1500 | FreeBSD ports | Physical constants for use in astronomy |
| astro/py-pymeeus | 0.5.12_1 | FreeBSD ports | Python implementation of Jean Meeus astronomical routines |
| astro/py-pysolar | 0.13_2 | FreeBSD ports | Simulate solar irradiation at any point on Earth |
| audio/praat | 7.0.02 | FreeBSD ports | Speech analysis tool used for doing phonetics by computer |
| biology/augustus | 3.5.0_18 | FreeBSD ports | Genome annotation tool |
| biology/barrnap | 1.10.6 | FreeBSD ports | BAsic Rapid Ribosomal RNA Predictor |
| biology/hhsuite | 3.3.0_3 | FreeBSD ports | Remote protein homology detection suite |
| biology/ncbi-cxx-toolkit | 30.8.0_1 | FreeBSD ports | NCBI C++ Toolkit |
| biology/ugene | 53.1_1 | FreeBSD ports | Integrated bioinformatics toolkit |
| cad/feappv | 5.1.2.e | FreeBSD ports | Finite element analysis program (personal version) |
| cad/opencascade | 8.0.1_3 | FreeBSD ports | Open CASCADE Technology, 3D modeling & numerical simulation |
| cad/opencascade740 | 7.4.0_5 | FreeBSD ports | Open CASCADE Technology, 3D modeling & numerical simulation |
| cad/scotch | 7.0.16 | FreeBSD ports | Package for graph and mesh partitioning and sparse matrix ordering |
| cad/scotch-edf | 6.0.4.a7_7 | FreeBSD ports | Package for graph and mesh partitioning and sparse matrix ordering |
| comms/hackrf | 2026.01.3 | FreeBSD ports | Low cost open source hardware software radio platform |
| devel/blitz | 1.0.2_4 | FreeBSD ports | Blitz++ Multi-Dimensional Array Library for C++ |
| devel/expected | 1.2.0 | FreeBSD ports | C++11/14/17 std::expected with functional-style extensions |
| devel/ftxui | 7.0.3 | FreeBSD ports | C++ Functional Terminal User Interface (TUI) library |
| devel/git-tui | 1.4.0 | FreeBSD ports | Terminal interface for some git commands |
| devel/gnatcoll-bindings | 26.0.0 | FreeBSD ports | GNATColl Bindings meta-port |
| devel/gnatcoll-bindings-gmp | 26.0.0 | FreeBSD ports | GNATColl interface to GNU Multiple Precision arithmetic library |
| devel/iscd-commons | 1.0.0 | FreeBSD ports | Common code shared by many ISCD softwares |
| devel/phasar | 2604_1 | FreeBSD ports | LLVM-based static analysis framework |
| devel/py-app-model | 0.5.1 | FreeBSD ports | Generic application schema implemented in python |
| devel/py-ast2json | 0.4_1 | FreeBSD ports | Convert a python source code into json-dumpable AST data |
| devel/py-bashlex | 0.18 | FreeBSD ports | Python parser for bash |
| devel/py-cibuildwheel | 4.3.1 | FreeBSD ports | Build Python wheels on CI with minimal configuration |
| devel/py-fire | 0.7.1 | FreeBSD ports | Library for automatically generating command line interfaces (CLIs) |
| devel/py-in-n-out | 0.2.1 | FreeBSD ports | Plugable dependency injection and result processing |
| devel/py-printree | 0.2.1 | FreeBSD ports | Pretty print python objects in a tree format |
| devel/py-pyconify | 0.2.1 | FreeBSD ports | Iconify for python: Universal icon framework |
| devel/py-rtree | 1.4.1 | FreeBSD ports | R-Tree Spatial Index For Python GIS |
| devel/py-zfp | 1.0.1_2 | FreeBSD ports | High throughput library for compressed floating-point arrays |
| devel/root | 6.38.00_3 | FreeBSD ports | Data analysis framework made at CERN |
| devel/vitables | 3.1.0_3 | FreeBSD ports | Viewer and editor of files in both PyTables format and HDF5 format |
| devel/zfp | 1.0.1 | FreeBSD ports | High throughput library for compressed floating-point arrays |
| french/med | 4.0.0_3 | FreeBSD ports | Modelisation et Echanges de Donnees |
| graphics/engauge-digitizer | 12.9.1_1 | FreeBSD ports | Extract data points from images of graphs |
| graphics/grads | 1.9b4_18 | FreeBSD ports | The Grid Analysis and Display System |
| graphics/py-colorcet | 3.2.1 | FreeBSD ports | Useful perceptually uniform colormaps for plotting scientific data |
| graphics/py-mayavi | 4.9.0 | FreeBSD ports | Application and library for 3D visualization and plotting in Python |
| graphics/py-pyqtgraph | 0.14.0 | FreeBSD ports | Scientific graphics and GUI library for Python |
| graphics/py-vispy | 0.16.2 | FreeBSD ports | High-performance interactive 2D/3D data visualization library |
| graphics/tachyon | 0.98.9_2 | FreeBSD ports | Multiproccess ray tracing system |
| lang/numbat | 1.24.0_3 | FreeBSD ports | Statically typed programming language for scientific computations |
| lang/p5-Quantum-Superpositions | 2.03 | FreeBSD ports | QM-like superpositions in Perl |
| lang/silq | 20250624_3 | FreeBSD ports | Silq from ETH Zuerich |
| math/R-cran-psych | 2.6.9 | FreeBSD ports | Psych package for the R project |
| math/R-cran-psychTools | 2.6.4 | FreeBSD ports | Tools to Accompany the 'psych' Package |
| math/SCIP | 10.1.0 | FreeBSD ports | Solver for mixed integer, mixed integer nonlinear programming |
| math/SoPlex | 8.1.0 | FreeBSD ports | Optimization package for solving linear programming problems (LPs) |
| math/alglib | 4.08.0 | FreeBSD ports | Numerical analysis and data processing library |
| math/ann | 1.1.2_1 | FreeBSD ports | Library for Approximate Nearest Neighbor Searching |
| math/emc2 | 2.17 | FreeBSD ports | Graphical editor of two-dimensional mesh geometries |
| math/fann | 2.2.0.20230126 | FreeBSD ports | Free open source neural network library |
| math/freefem++ | 4.17 | FreeBSD ports | Partial differential equation solver |
| math/libxsmm | 1.17_1 | FreeBSD ports | Library for dense and sparse matrix operations and deep learning |
| math/mathex | 0.3.b | FreeBSD ports | C++ library to parse/evaluate mathematical expressions |
| math/parmgridgen | 1.0_17 | FreeBSD ports | Library for obtaining a sequence of successive coarse grids |
| math/plplot | 5.15.0_8 | FreeBSD ports | Scientific plotting package |
| math/py-deap | 1.4.4 | FreeBSD ports | Distributed Evolutionary Algorithms in Python |
| math/sprng | 5.0_4 | FreeBSD ports | Scalable Parallel Pseudo Random Number Generators Library |
| math/vdt | 0.4.6 | FreeBSD ports | Fast and inline implementations of mathematical functions |
| misc/adios2 | 2.10.2_8 | FreeBSD ports | Next generation of ADIOS developed in the Exascale Computing Program |
| misc/openmvg | 2.1_7 | FreeBSD ports | Multiple View Geometry (MVG) library |
| misc/vxl | 3.3.2_3 | FreeBSD ports | C++ libraries for computer vision and image understanding |
| science/2d-rewriter | 1.6_1 | FreeBSD ports | Cellular automata simulator |
| science/ALPSCore | 2.3.3 | FreeBSD ports | Generic algorithms and utilities for condensed matter physics |
| science/ChipmunkPhysics | 7.0.1_2 | FreeBSD ports | 2D physics engine written in C |
| science/InsightToolkit | 5.3.0_10 | FreeBSD ports | Insight Toolkit |
| science/PETSc | 3.26.0_1 | FreeBSD ports | Suite of data structures and routines from Argonne National Laboratory |
| science/R-cran-DCluster | 0.2.10 | FreeBSD ports | Functions for the detection of spatial clusters of diseases |
| science/R-cran-Epi | 2.66 | FreeBSD ports | Package for statistical analysis in epidemiology |
| science/R-cran-FAdist | 2.4_1 | FreeBSD ports | Probability distributions that are sometimes useful in hydrology |
| science/R-cran-bayesm | 3.1.7 | FreeBSD ports | Bayesian Inference for Marketing/Micro-econometrics |
| science/R-cran-cmprsk | 2.2.12 | FreeBSD ports | Subdistribution Analysis of Competing Risks |
| science/R-cran-e1071 | 1.7.17 | FreeBSD ports | Misc Functions of the Department of Statistics (e1071), TU Wien |
| science/R-cran-epicalc | 2.15.1.0_12 | FreeBSD ports | Epidemiological calculator |
| science/R-cran-etm | 1.1.2 | FreeBSD ports | Empirical Transition Matrix |
| science/R-cran-fastICA | 1.2.8 | FreeBSD ports | FastICA Algorithms to Perform ICA and Projection Pursuit |
| science/R-cran-kernlab | 0.9.33 | FreeBSD ports | Kernel-Based Machine Learning Lab |
| science/R-cran-ks | 1.15.3 | FreeBSD ports | Kernel Smoothing |
| science/R-cran-snow | 0.4.4_1 | FreeBSD ports | Support for simple parallel computing in R |
| science/R-cran-som | 0.3.5.2 | FreeBSD ports | Self-Organizing Map |
| science/R-cran-udunits2 | 0.13.2.2 | FreeBSD ports | Udunits-2 Bindings for R |
| science/abinit | 10.8.3 | FreeBSD ports | Full-featured atomic-scale first-principles simulation software |
| science/acados | 0.6.0 | FreeBSD ports | Fast and embedded solvers for nonlinear optimal control |
| science/afni | 26.3.04 | FreeBSD ports | Advanced Functional Neuro Imaging |
| science/agrum | 3.2.1 | FreeBSD ports | Graphical modeler for Bayesian networks, influence diagrams, etc |
| science/aircraft-datcom | 0.0.20120723_7 | FreeBSD ports | Modified USAF Aircraft Stability and Control Data Compendium |
| science/amrex | 26.09 | FreeBSD ports | AMReX: Software Framework for Block Structured AMR |
| science/anari | 0.16.0 | FreeBSD ports | ANARI Cross-Platform 3D Rendering Engine API |
| science/antioch | 0.4.0.156_15 | FreeBSD ports | C++ Chemical Kinetics, Thermodynaimics, and Transport Library |
| science/apbs | 3.4.1 | FreeBSD ports | Electrostatic and solvation properties for complex molecules |
| science/arbor | 0.12.2 | FreeBSD ports | Multi-compartment neural network simulation library |
| science/ascent | 0.9.5_4 | FreeBSD ports | Visualization and analysis runtime for multi-physics HPC simulations |
| science/atompaw | 4.2.0.5_2 | FreeBSD ports | Tool for projector augmented wave functions for molecular simulations |
| science/avogadro2 | 2.0.0_2 | FreeBSD ports | Chemical editor and visualization application |
| science/avogadrolibs | 2.0.0_1 | FreeBSD ports | Avogadro2 libraries for chemical editor and visualization applications |
| science/axom | 0.15.0_1 | FreeBSD ports | Infrastructure for development of multi-physics applications and tools |
| science/bagel | 1.2.2.147 | FreeBSD ports | Brilliantly Advanced General Electronic-structure Library |
| science/bddsolve | 1.04_22 | FreeBSD ports | BDD-based satisfiability and reachability solver |
| science/berkeleygw | 4.0_4 | FreeBSD ports | Scientific program aimed at the ab initio virtual experimentation |
| science/bodr | 10 | FreeBSD ports | Chemistry data like element and isotope properties, atomic radii, etc |
| science/bout++ | 5.1.1_11 | FreeBSD ports | Plasma fluid finite-difference simulation code |
| science/bout++-merging-filaments | g20200812_3 | FreeBSD ports | Simulation of reconnection during merging of current filaments |
| science/buddy | 2.4_2 | FreeBSD ports | Binary Decision Diagram library |
| science/cantera | 3.2.0_1 | FreeBSD ports | Chemical kinetics, thermodynamics, and transport tool suite |
| science/cardioid | g20211026_5 | FreeBSD ports | Cardiac simulation toolkit |
| science/cdf | 3.9.1_1 | FreeBSD ports | Device independent view of the CDF data model |
| science/cdk | 2.13 | FreeBSD ports | Chemistry Development Kit |
| science/cdo | 2.6.4_1 | FreeBSD ports | Climate Data Operators |
| science/cgnslib | 4.5.2,1 | FreeBSD ports | CFD General Notation System library code |
| science/cgribex | 2.3.1 | FreeBSD ports | Lightweight GRIBEX in C with portable Fortran interface |
| science/checkmol | 0.5_18 | FreeBSD ports | Analyze molecules for the presence of functional groups |
| science/chemical-mime-data | 0.1.94_12 | FreeBSD ports | Collection of chemical MIME types for UNIX desktops |
| science/chemicalfun | 0.1.13 | FreeBSD ports | C++ library for working with chemical reactions and formulas |
| science/chemps2 | 1.8.12_7 | FreeBSD ports | Spin-adapted implementation of DMRG for ab initio quantum chemistry |
| science/chemtool | 1.6.14_5 | FreeBSD ports | Draw organic molecules easily and store them |
| science/chemtool-devel | 1.7.20050716_13 | FreeBSD ports | Drawing organic molecules easily and store them (developer version) |
| science/chimes-calculator | 1.0.2_1 | FreeBSD ports | Chebyshev Interaction Model for Efficient Simulation |
| science/chrono | 9.0.1_6 | FreeBSD ports | C++ library for multi-physics simulation |
| science/cif-tools | 2.0.0_1 | FreeBSD ports | Suite of programs to manipulate and examine mmCIF files |
| science/clhep | 2.4.7.2 | FreeBSD ports | Object-oriented toolkit for particle physics applications by CERN |
| science/clipper | 2.1.20180802_5 | FreeBSD ports | Libraries for the organisation of crystallographic data |
| science/code_saturne | 8.1.1_10 | FreeBSD ports | EDF's general purpose Computational Fluid Dynamics (CFD) software |
| science/conduit | 0.9.9_1 | FreeBSD ports | Simplified data exchange for HPC simulations |
| science/coordgenlibs | 3.0.2 | FreeBSD ports | Schrodinger-developed 2D coordinate generation |
| science/cp2k | 2026.2 | FreeBSD ports | Quantum chemistry and solid state physics software package |
| science/cp2k-data | 2026.2 | FreeBSD ports | Data for cp2k quantum chemistry package |
| science/cpcmx | 1.1.0 | FreeBSD ports | Extended conductor-like polarizable continuum solvation model |
| science/csvtk | 0.37.0_7 | FreeBSD ports | Cross-platform and ultrafast toolkit for CSV/TSV processing |
| science/dakota | 6.23.0_4 | FreeBSD ports | Interface between analysis codes & iterative systems analysis methods |
| science/dalton | 2020.0_7 | FreeBSD ports | Powerful molecular electronic structure program for quantum chemistry |
| science/dd_package | 2.2.0 | FreeBSD ports | MQT decision diagram package tailored to quantum computing |
| science/devisor | 2.1_5 | FreeBSD ports | Design and Visualization Software Resource for FeatFlow |
| science/dftbplus | 25.1 | FreeBSD ports | DFTB+: Package for performing fast atomistic simulations |
| science/dftd3 | 3.2.0.3_1 | FreeBSD ports | S. Grimme's dispersion correction for DFT, Hartree-Fock methods |
| science/dftd4 | 4.3.0 | FreeBSD ports | Atomic-charge dependent london dispersion correction computation |
| science/dimod | 0.12.22 | FreeBSD ports | DWave: Shared API for QUBO/Ising samplers |
| science/dirac | 26.1_1 | FreeBSD ports | Program for atomic & molecular relativistic all-electron calculations |
| science/dkh | 1.2_6 | FreeBSD ports | Wolf, Reiher, and Hess's Douglas-Kroll-Hess relativistic correction |
| science/dlib-cpp | 20.0.1 | FreeBSD ports | Machine learning framework written in C++ |
| science/drawxtl | 5.5_1 | FreeBSD ports | Crystal structure visualization tool |
| science/dssp | 4.5.8_1 | FreeBSD ports | Application to assign secondary structure to proteins |
| science/dwave-preprocessing | 0.6.11 | FreeBSD ports | DWave: Preprocessing tools to aid in solving binary quadratic models |
| science/dynare | 7.0_1 | FreeBSD ports | Software platform for handling a wide class of economic models |
| science/eccodes | 2.49.0 | FreeBSD ports | ECMWF API for WMO FM-92 GRIB and FM-94 BUFR messages |
| science/elk | 11.2.3 | FreeBSD ports | All-electron full-potential linearised augmented-planewave code |
| science/elmerfem | 26.2.1_2 | FreeBSD ports | Multiphysical simulation software |
| science/epte | 2.0.8_2 | FreeBSD ports | Electronic Periodic Table of the Elements |
| science/erd | 3.0.6_6 | FreeBSD ports | AcesIII electron repulsion integrals |
| science/ergo | 3.8.2_2 | FreeBSD ports | Quantum chemistry program for large-scale atomic calculations |
| science/erkale | g20260930 | FreeBSD ports | Quantum chemistry program to solve the electronic structure of atoms |
| science/erkale-pseudopotentials | g20220405 | FreeBSD ports | Pseudopotentials for Erkale, the quantum chemistry program |
| science/fastcap | 2.0.w.010524,1 | FreeBSD ports | Three-dimensional capacitance extraction program |
| science/fasthenry | 3.0.w.031424_1 | FreeBSD ports | Multipole-accelerated inductance analysis program |
| science/fastjet | 3.5.1 | FreeBSD ports | Package for jet finding in pp and e+e- collisions |
| science/feff10 | 10.0.0.16_1 | FreeBSD ports | Ab initio scattering calculations of X-ray absorption fine structure |
| science/fleur | 8.1 | FreeBSD ports | FLAPW code for atomic computations in quantum chemistry and physics |
| science/frontistr | 5.2_8 | FreeBSD ports | Large-Scale Parallel FEM Program for Nonlinear Structural Analysis |
| science/fsom | g20151117_2 | FreeBSD ports | Tiny C library for managing SOM (Self-Organizing Maps) neural networks |
| science/fvcom | 2.7.1_18 | FreeBSD ports | Unstructured Grid Finite Volume Coastal Ocean Model |
| science/fvcom-mpi | 2.7.1_16 | FreeBSD ports | Unstructured Grid Finite Volume Coastal Ocean Model |
| science/gabedit | 2.5.1.300720_2 | FreeBSD ports | Graphical user interface for several chemistry software packages |
| science/gamess-us | 20181013_8 | FreeBSD ports | General Atomic and Molecular Electronic Structure System (US) |
| science/gbtolib | 3.0.3_6 | FreeBSD ports | High-performance library for evaluation of molecular integrals |
| science/gchemutils | 0.14.17_6 | FreeBSD ports | C++ classes and Gtk3 widgets related to chemistry |
| science/gcp | 2.3.2 | FreeBSD ports | Geometrical Counter-Poise Correction |
| science/gdma | 2.2.6_6 | FreeBSD ports | Anthony Stone's Gaussian Distributed Multipole Analysis |
| science/geant4 | 11.3.2 | FreeBSD ports | Simulate the passage of particles through matter |
| science/gemmi | 0.7.5_1 | FreeBSD ports | Macromolecular crystallography library and utilities |
| science/getdp | 4.0.0.r1 | FreeBSD ports | Rather general finite element solver using mixed finite elements |
| science/ghemical | 3.0.0_29 | FreeBSD ports | Computational chemistry software package |
| science/ghmm | 0.9.r3_3 | FreeBSD ports | General Hidden Markov Model Library in C |
| science/gnudatalanguage | 1.1.3_5 | FreeBSD ports | Free IDL-compatible incremental compiler |
| science/gpaw-setups | 0.9.20000 | FreeBSD ports | Setups (data files) for py-gpaw, the DFT quantum chemistry software |
| science/gperiodic | 3.0.3_3 | FreeBSD ports | Graphical application for browsing the periodic table |
| science/gramps | 6.0.8 | FreeBSD ports | GTK3-based genealogy program |
| science/gromacs | 2026.3 | FreeBSD ports | Compute molecular dynamics |
| science/gsmc | 1.1_7 | FreeBSD ports | Smith chart program for impedance matching |
| science/h5utils | 1.13.2_4 | FreeBSD ports | Set of utilities for visualization and conversion of HDF5 format |
| science/h5z-zfp | 1.1.1 | FreeBSD ports | Registered ZFP compression plugin for HDF5 |
| science/harminv | 1.4.2_3 | FreeBSD ports | Solver of harmonic inversion |
| science/hdf | 4.3.1,1 | FreeBSD ports | Hierarchical Data Format library (from NCSA) |
| science/hdf5 | 1.12.2_2,1 | FreeBSD ports | Hierarchical Data Format library (from NCSA) (latest) |
| science/hdf5-110 | 1.10.11 | FreeBSD ports | Hierarchical Data Format library (from NCSA) 1.10.x |
| science/hdf5-18 | 1.8.23 | FreeBSD ports | Hierarchical Data Format library (from NCSA) 1.8 |
| science/hdf5-21 | 2.1.1 | FreeBSD ports | Hierarchical Data Format library (from NCSA) 2.1 |
| science/healpix | 3.83 | FreeBSD ports | Software for pixelization, visualization, etc of data on the sphere |
| science/helfem | g20251026_2 | FreeBSD ports | Finite element methods for electronic structure calculations |
| science/hepmc3 | 3.3.1 | FreeBSD ports | Event record for High Energy Physics Monte Carlo generators/simulation |
| science/highfive | 3.3.0 | FreeBSD ports | Header-only C++ HDF5 interface |
| science/hpddm | 2.4.1_1 | FreeBSD ports | Framework for high-performance domain decomposition methods |
| science/hypre | 3.2.0 | FreeBSD ports | Scalable Linear Solvers and Multigrid Methods |
| science/iboview | 20211019a | FreeBSD ports | Program for analyzing molecular electronic structure |
| science/isaac-cfd | 4.2_17 | FreeBSD ports | Integrated Solution Algorithm for Arbitrary Configuration |
| science/jdftx | 1.7.0_10 | FreeBSD ports | Software for joint density functional theory in chemistry |
| science/jmol | 16.1.25_3 | FreeBSD ports | Java 3D viewer for chemical structures |
| science/jstrack | 3.4.0 | FreeBSD ports | Freeware hurricane tracking program |
| science/kalzium | 26.08.2 | FreeBSD ports | Periodic table of elements for KDE |
| science/kim-api | 2.4.2 | FreeBSD ports | Framework for reliable, reproducible, portable molecular simulations |
| science/kplib | 1.1.1 | FreeBSD ports | Library for finding optimal Generalized Monkhorst-Pack k-points grid |
| science/kst | 3.0.0 | FreeBSD ports | Data viewing and plotting tool |
| science/lammps | 20260930 | FreeBSD ports | Classical molecular dynamics code with a focus on materials modeling |
| science/lamprop | 2020.12.28 | FreeBSD ports | Calculates properties of fiber reinforced composites |
| science/latte | 1.2.2_8 | FreeBSD ports | Quantum chemistry: Density functional tight binding molecular dynamics |
| science/libaec | 1.1.7 | FreeBSD ports | Adaptive entropy coding library |
| science/libccp4 | 8.0.0 | FreeBSD ports | Protein X-ray crystallography toolkit |
| science/libcifpp | 10.0.4_1 | FreeBSD ports | Library to manipulate mmCIF and PDB files |
| science/libcint | 6.1.3_2 | FreeBSD ports | General GTO integrals for quantum chemistry |
| science/libctl | 4.5.0_5 | FreeBSD ports | Control Language Library |
| science/libecpint | 1.0.7 | FreeBSD ports | Library for the evaluation of integrals over effective core potentials |
| science/libefp | 1.8.0 | FreeBSD ports | Effective fragment potential method in quantum chemistry |
| science/libgetar | 1.1.7 | FreeBSD ports | Library to read and write GEneric Trajectory ARchives |
| science/libghemical | 3.0.0_22 | FreeBSD ports | Support libraries of science/ghemical port |
| science/libgridxc | 2.0.3 | FreeBSD ports | Library to compute the exchange and correlation energy and potentials |
| science/libint | 1.2.1.15 | FreeBSD ports | Evaluate the integrals in modern atomic and molecular theory |
| science/libint2 | 2.12.0_1 | FreeBSD ports | Evaluate the integrals in modern atomic and molecular theory |
| science/libint2-psi4 | 0.1.2.8.1_2 | FreeBSD ports | Evaluate the integrals in modern atomic and molecular theory (psi4) |
| science/libkml | 1.3.0_32 | FreeBSD ports | Reference implementation of OGC KML 2.2 |
| science/liblinear | 2.50 | FreeBSD ports | Library for Large Linear Classification |
| science/libmbd | 0.15.0 | FreeBSD ports | Many-body dispersion library |
| science/libminc | 2.5.0 | FreeBSD ports | Core library and API of the MINC toolkit |
| science/libmsym | 0.2.3 | FreeBSD ports | Molecular point group symmetry library |
| science/libnegf | 1.1.3_6 | FreeBSD ports | Non Equilibrium Green's Functions library |
| science/liboglappth | 1.0.0_5 | FreeBSD ports | Support libraries of science/ghemical port |
| science/libpsml | 2.1.0 | FreeBSD ports | Library to handle pseudopotentials in PSML format |
| science/libquantum | 1.1.1_1 | FreeBSD ports | C library for quantum computing and quantum simulation |
| science/libssm | 1.4.0_4 | FreeBSD ports | C++ toolkit for superposition of macromolecules |
| science/libsvm | 3.24 | FreeBSD ports | Library for Support Vector Machines |
| science/libsvm-python | 3.24_1 | FreeBSD ports | Library for Support Vector Machines |
| science/libvdwxc | 0.4.6.20190510 | FreeBSD ports | Van der Waals density functional (DFT) library |
| science/libwignernj | 0.8.0 | FreeBSD ports | Library for exact evaluation of Wigner/Clebsch-Gordan coefficients |
| science/libxc | 7.1.2 | FreeBSD ports | Library of exchange-correlation functionals for DFT |
| science/liggghts | 3.8.0.58_9 | FreeBSD ports | Discrete element method particle simulation software |
| science/linearelasticity | 1.0.0 | FreeBSD ports | Elas, a solver for linear elasticity |
| science/linux-ai-ml-env | 1.0.2_1 | FreeBSD ports | Linux Python environment for running Stable Diffusion models and PyTorch CUDA examples |
| science/linux-zotero | 6.0.10_2 | FreeBSD ports | Reference management for bibliographic data and research materials |
| science/luscus | 0.8.6_5 | FreeBSD ports | Molecular editor and viewer |
| science/m-aneos | 1.0.1_1 | FreeBSD ports | M-ANEOS: program for construction of thermodynamic equations of state |
| science/madness | 2026.09.05 | FreeBSD ports | Multiresolution adaptive numeric environment for scientific simulation |
| science/maeparser | 1.3.3_3 | FreeBSD ports | Parser for Schrodinger Maestro files |
| science/massxpert | 6.0.3_1 | FreeBSD ports | Software suite for (bio)chemists |
| science/mbdyn | 1.7.3_20 | FreeBSD ports | MultiBody Dynamics analysis system |
| science/mcpl | 2.2.8 | FreeBSD ports | Monte Carlo Particle Lists library |
| science/mcstas | 2.5 | FreeBSD ports | Monte Carlo neutron ray tracing package |
| science/mcstas-comps | 2.5_3 | FreeBSD ports | Component Library for the McStas neutron ray tracing package |
| science/mctc-lib | 0.6.1 | FreeBSD ports | Computation tool chain library to work with molecular structure data |
| science/mcxtrace | 1.2_1 | FreeBSD ports | Monte Carlo X-ray tracing package |
| science/mcxtrace-comps | 1.2 | FreeBSD ports | Component Library for the McXtrace X-ray tracing package |
| science/mdynamix | 5.3.0_1 | FreeBSD ports | General purpose molecular dynamics code |
| science/medit | 2012.02.05_5 | FreeBSD ports | Interactive meshes visualization |
| science/meep | 1.33.0_2 | FreeBSD ports | Finite-difference time-domain software for electromagnetic simulations |
| science/metaphysicl | 1.3.3_1 | FreeBSD ports | Metaprogramming, operator-overloaded classes for numerical simulations |
| science/minc-tools | 2.3.00_1 | FreeBSD ports | Basic minc-tools from former minc repository |
| science/mmdb2 | 2.0.22 | FreeBSD ports | C++ toolkit for working with macromolecular coordinate files |
| science/mmg | 5.8.0_1 | FreeBSD ports | Bidimensional and tridimensional remeshing |
| science/mmtf-cpp | 1.1.0_1 | FreeBSD ports | C++ MMTF format API, decoder and encoder, for molecular structures |
| science/mol2ps | 0.4c_2 | FreeBSD ports | Read molecular structure files and generate Postscript output |
| science/molgif | g20180108_47 | FreeBSD ports | Tool to create GIF animations of molecules |
| science/molscript | 2.1.2_4 | FreeBSD ports | Display 3D molecules in schematic and detailed representations |
| science/molsketch | 0.8.4 | FreeBSD ports | 2D molecule editor |
| science/moltui | 0.6.0 | FreeBSD ports | Terminal-based 3D molecular viewer |
| science/mopac | 23.2.5_2,1 | FreeBSD ports | Semi-empirical (MNDO, etc.) molecular orbital calculation |
| science/mp2d | g20250131 | FreeBSD ports | Program for calculating the MP2D dispersion energy |
| science/mpb | 1.12.0_1 | FreeBSD ports | MIT Photonic-Bands |
| science/mpqc | 2.3.1_54 | FreeBSD ports | Massively Parallel Quantum Chemistry Program |
| science/mrchem | 1.1.4_1 | FreeBSD ports | MultiResolution Chemistry |
| science/mrcpp | 1.5.0_2 | FreeBSD ports | MultiResolution Computation Program Package |
| science/msms | 2.6.1_1 | FreeBSD ports | Program to efficiently compute molecular surfaces |
| science/mstore | 0.4.0 | FreeBSD ports | Molecular structure store for testing |
| science/multicharge | 0.5.0_1 | FreeBSD ports | Electronegativity equilibration model for atomic partial charges |
| science/multiwfn | 3.8_6 | FreeBSD ports | Multifunctional wavefunction analysis for quantum chemistry |
| science/mutationpp | 1.0.6.d2 | FreeBSD ports | MUlticomponent Thermodynamic And Transport library for IONized gases |
| science/namd | 2.12_4 | FreeBSD ports | Computer software for molecular dynamics simulation |
| science/ncrystal | 4.4.6 | FreeBSD ports | Library for thermal neutron transport in crystals and other materials |
| science/neko | 1.1.2 | FreeBSD ports | Framework for high-order spectral element flow simulations |
| science/nest | 3.10_1 | FreeBSD ports | Simulator for spiking neural network models |
| science/netcdf | 4.10.1 | FreeBSD ports | C library for machine-independent, array-oriented data access |
| science/netcdf-cxx | 4.3.1_3 | FreeBSD ports | C++ library for machine-independent, array-oriented data access |
| science/netcdf-fortran | 4.6.4 | FreeBSD ports | Fortran library for machine-independent, array-oriented data access |
| science/nifticlib | 3.0.1 | FreeBSD ports | Neuroimaging Informatics Technology Initiative data format |
| science/nlcglib | 1.4.0 | FreeBSD ports | Nonlinear CG methods for wave-function optimization in DFT |
| science/numsa | 0.2.0 | FreeBSD ports | Solvent accessible surface area calculation |
| science/nwchem | 7.3.1_1 | FreeBSD ports | High-performance computational chemistry software |
| science/nwchem-data | 7.3.1 | FreeBSD ports | Data for NWChem, the computational chemistry software |
| science/ocean | 3.1.0_5 | FreeBSD ports | BSE code for core spectroscopy |
| science/octopus | 16.4_1 | FreeBSD ports | Scientific program aimed at the ab initio virtual experimentation |
| science/openbabel | 3.2.1_1 | FreeBSD ports | Chemical toolbox designed to speak the many languages of chemical data |
| science/openems | 0.0.36_10 | FreeBSD ports | Electromagnetic field solver using the EC-FDTD method |
| science/openkim-models | 2021.08.11_2 | FreeBSD ports | Open Knowledgebase of Interatomic Models |
| science/openmc | 0.16.0 | FreeBSD ports | Monte Carlo neutron and photon transport simulation code |
| science/openmodelica | 1.25.7_3 | FreeBSD ports | Modelica-based modeling and simulation environment |
| science/openmolcas | 26.06 | FreeBSD ports | Quantum chemistry software package |
| science/openmx | 3.9.9_3 | FreeBSD ports | Nanoscale material simulations using density functional theories (DFT) |
| science/opensim-core | 4.6 | FreeBSD ports | Software for modeling of musculoskeletal structures |
| science/opensph | 0.4.1_12 | FreeBSD ports | Library and graphical tools for running SPH and N-body simulations |
| science/opsin | 3.0.20190223_4 | FreeBSD ports | Open Parser for Systematic IUPAC Nomenclature of chemical names |
| science/optench | 1.2.5 | FreeBSD ports | Virtual optical bench |
| science/orthanc | 1.13.0_1 | FreeBSD ports | Lightweight DICOM server for healthcare and medical research |
| science/orthanc-dicomweb | 1.24_1 | FreeBSD ports | Orthanc DICOMWeb plugin |
| science/orthanc-mysql | 5.2_6 | FreeBSD ports | Orthanc plugin to use MySQL/MariaDB for indexing or storage |
| science/orthanc-postgresql | 10.3_1 | FreeBSD ports | Orthanc plugin to use PostgreSQL for indexing or storage |
| science/orthanc-webviewer | 2.10_2 | FreeBSD ports | Orthanc web viewer plugin |
| science/p5-Chemistry-3DBuilder | 0.10_1 | FreeBSD ports | Generate 3D coordinates from a connection table |
| science/p5-Chemistry-Bond-Find | 0.23_1 | FreeBSD ports | Detect bonds in a molecule and assign formal bond orders |
| science/p5-Chemistry-Canonicalize | 0.11_1 | FreeBSD ports | Number the atoms in a molecule in a unique way |
| science/p5-Chemistry-Elements | 1.081 | FreeBSD ports | Perl extension for working with Chemical Elements |
| science/p5-Chemistry-File-MDLMol | 0.21_1 | FreeBSD ports | MDL molfile reader/write |
| science/p5-Chemistry-File-Mopac | 0.15_1 | FreeBSD ports | MOPAC 6 input file reader/writer |
| science/p5-Chemistry-File-PDB | 0.23_1 | FreeBSD ports | Perl module to read and write PDB files |
| science/p5-Chemistry-File-SLN | 0.11_1 | FreeBSD ports | SLN linear notation parser/writer |
| science/p5-Chemistry-File-SMARTS | 0.22_1 | FreeBSD ports | SMARTS chemical substructure pattern linear notation parser |
| science/p5-Chemistry-File-SMILES | 0.47_2 | FreeBSD ports | SMILES linear notation parser/writer |
| science/p5-Chemistry-File-VRML | 0.10_1 | FreeBSD ports | Generate VRML models for molecules |
| science/p5-Chemistry-File-XYZ | 0.11_1 | FreeBSD ports | XYZ molecule format reader/writer |
| science/p5-Chemistry-FormulaPattern | 0.10_1 | FreeBSD ports | Match molecule by formula |
| science/p5-Chemistry-InternalCoords | 0.18_1 | FreeBSD ports | Represent the position of an atom using internal coordinates |
| science/p5-Chemistry-Isotope | 0.11_1 | FreeBSD ports | Table of the isotopes exact mass data |
| science/p5-Chemistry-MacroMol | 0.06_1 | FreeBSD ports | Perl toolkit to describe macromolecules |
| science/p5-Chemistry-MidasPattern | 0.11_1 | FreeBSD ports | Select atoms in macromolecules |
| science/p5-Chemistry-Mok | 0.25_1 | FreeBSD ports | Molecular awk interpreter |
| science/p5-Chemistry-Mol | 0.40 | FreeBSD ports | Perl toolkit to describe molecules |
| science/p5-Chemistry-OpenSMILES | 0.12.0 | FreeBSD ports | OpenSMILES format reader and writer |
| science/p5-Chemistry-Pattern | 0.27_1 | FreeBSD ports | Chemical substructure pattern matching |
| science/p5-Chemistry-Reaction | 0.02_1 | FreeBSD ports | Represent a ring as a substructure of a molecule |
| science/p5-Chemistry-Ring | 0.20_1 | FreeBSD ports | Represent a ring as a substructure of a molecule |
| science/p5-Geo-BUFR | 1.42 | FreeBSD ports | Perl extension for handling of WMO BUFR files |
| science/p5-Geo-Calc | 0.12 | FreeBSD ports | Simple geo calculator for points and distances |
| science/p5-Geo-Coordinates-Converter | 0.13_1 | FreeBSD ports | Simple converter of geo coordinates |
| science/p5-Geo-Coordinates-Converter-iArea | 0.14_1 | FreeBSD ports | Some utility functions around iArea |
| science/p5-Geo-Coordinates-Transform | 0.10 | FreeBSD ports | Transform Latitude/Longitude between various different coordinate functions |
| science/p5-Geo-WebService-Elevation-USGS | 0.202 | FreeBSD ports | Perl extension for elevation queries against USGS web services |
| science/p5-Mcstas-Tools | 2.5_3 | FreeBSD ports | Perl based tools for the McStas neutron ray tracing package |
| science/p5-PerlMol | 0.3500_2 | FreeBSD ports | Perl modules for molecular chemistry |
| science/p5-Physics-Unit | 0.60 | FreeBSD ports | Manipulate Physics units and dimensions |
| science/packmol | 21.2.3 | FreeBSD ports | Creates Initial Configurations for Molecular Dynamics Simulations |
| science/pagmo2 | 2.20.0 | FreeBSD ports | Platform to perform parallel computations of optimization tasks |
| science/paje | 1.97_13 | FreeBSD ports | Generic visualization tool for GNUstep (Gantt chart and more) |
| science/paraview | 6.2.0_2 | FreeBSD ports | Powerful scientific data visualization application |
| science/parthenon | 25.12.700 | FreeBSD ports | Portable block-structured Adaptive Mesh Refinement (AMR) framework |
| science/pastix | 6.3.2_4 | FreeBSD ports | PaStiX: a sparse direct solver |
| science/pcmsolver | 1.3.0_3 | FreeBSD ports | API for the Polarizable Continuum Model |
| science/phonopy | 4.0.0 | FreeBSD ports | Package for phonon calculations at harmonic and quasi-harmonic levels |
| science/plumed | 2.10.1 | FreeBSD ports | PLUgin for MolEcular Dynamics |
| science/pnetcdf | 1.15.1 | FreeBSD ports | Library providing high-performance I/O |
| science/polytope | 0.7.5_1 | FreeBSD ports | Library for generating Voronoi and Voronoi-like tessellations |
| science/precice | 3.4.1_3 | FreeBSD ports | Coupling library for partitioned multi-physics simulations |
| science/psi4 | 1.11 | FreeBSD ports | Open-source suite of ab initio quantum chemistry programs |
| science/pulseview | 0.4.2_9 | FreeBSD ports | GUI client that supports various hardware logic analyzers |
| science/py-GPy | 1.14.2 | FreeBSD ports | Gaussian process toolbox |
| science/py-GPyOpt | 1.2.6_4 | FreeBSD ports | Bayesian optimization toolbox based on GPy |
| science/py-HepMC3 | 3.3.1 | FreeBSD ports | Event record for High Energy Physics Monte Carlo generators/simulation |
| science/py-HofstadterTools | 1.0.7 | FreeBSD ports | Package for analyzing the Hofstadter model of particles in the lattice |
| science/py-MDAnalysis | 2.10.0_4 | FreeBSD ports | Python library to analyze molecular dynamics trajectories |
| science/py-MDAnalysisTests | 2.10.0_1 | FreeBSD ports | Test code and the trajectory data for test cases of MDAnalysis |
| science/py-OpenFermion | 1.8.1 | FreeBSD ports | Electronic structure package for quantum computers |
| science/py-OpenFermion-Dirac | g20220812_3 | FreeBSD ports | Interface between OpenFermion and Dirac |
| science/py-OpenFermion-PySCF | 0.5_3 | FreeBSD ports | Interface between OpenFermion and PySCF |
| science/py-OpenMC | 0.16.0 | FreeBSD ports | Monte Carlo neutron and photon transport simulation code (Python) |
| science/py-PubChemPy | 1.0.5 | FreeBSD ports | Simple Python wrapper around the PubChem PUG REST API |
| science/py-PyFR | 3.1_2 | FreeBSD ports | Framework for solving advection-diffusion type problems |
| science/py-PyNE | 0.7.8.226 | FreeBSD ports | PyNE: The Nuclear Engineering Toolkit |
| science/py-SimpleSpectral | 1.0.0_6 | FreeBSD ports | Simplified scipy.signal.spectral module with only pyFFTW support |
| science/py-abipy | 1.0.0 | FreeBSD ports | Library for analyzing the results produced by ABINIT |
| science/py-access | 1.1.10_1 | FreeBSD ports | Calculate spatial accessibility metrics |
| science/py-arbor | 0.12.2 | FreeBSD ports | Multi-compartment neural network simulation library |
| science/py-arch | 8.0.0_1 | FreeBSD ports | Autoregressive Conditional Heteroskedasticity (ARCH) models |
| science/py-asap3 | 3.13.11_2 | FreeBSD ports | Classical potentials for MD with ASE |
| science/py-asdf | 5.4.0 | FreeBSD ports | Python tools to handle ASDF files |
| science/py-asdf-standard | 1.5.0 | FreeBSD ports | ASDF Standard schemas |
| science/py-asdf-transform-schemas | 0.6.0 | FreeBSD ports | ASDF schemas for transforms |
| science/py-ase | 3.29.0 | FreeBSD ports | Atomic simulation environment |
| science/py-atomium | 1.0.11_6 | FreeBSD ports | Molecular modeller and file parser |
| science/py-avogadrolibs | 2.0.0 | FreeBSD ports | Python bindings for Avogadro2 chemistry libraries |
| science/py-boutdata | 0.4.0_2 | FreeBSD ports | Python package for collecting BOUT++ data |
| science/py-boututils | 0.2.1_2 | FreeBSD ports | Python package containing BOUT++ utils |
| science/py-cdo | 1.6.1 | FreeBSD ports | Python binding to CDO (Climate Data Operators) |
| science/py-cfgrib | 0.9.15.1_2 | FreeBSD ports | Map GRIB files to the NetCDF Common Data Model following the CF Convention using ecCodes |
| science/py-chainer | 7.8.1_16 | FreeBSD ports | Deep learning framework |
| science/py-chainer-chemistry | 0.7.1_5 | FreeBSD ports | Library for deep learning in biology and chemistry |
| science/py-chempy | 0.10.2 | FreeBSD ports | Package useful for solving problems in chemistry |
| science/py-cirq-aqt | 1.7.0 | FreeBSD ports | Cirq module to run on AQT quantum computers |
| science/py-cirq-core | 1.7.0 | FreeBSD ports | Framework for Noisy Intermediate Scale Quantum (NISQ) circuits |
| science/py-cirq-google | 1.7.0 | FreeBSD ports | Google Cirq adapter for IQM's quantum architectures |
| science/py-cirq-ionq | 1.7.0 | FreeBSD ports | Cirq module to run on IonQ quantum computers |
| science/py-cirq-pasqal | 1.7.0 | FreeBSD ports | Cirq module to run on pasqal quantum computers |
| science/py-cirq-web | 1.7.0 | FreeBSD ports | Cirq module to visualize quantum circuits in 3D in a web browser |
| science/py-coards | 1.0.5_4 | FreeBSD ports | COARDS compliant time parser |
| science/py-corner | 2.3.0 | FreeBSD ports | Make some beautiful corner plots |
| science/py-dftbplus | 25.1 | FreeBSD ports | DFTB+: Package for performing fast atomistic simulations |
| science/py-dftd4 | 4.3.0 | FreeBSD ports | Python API of the DFT-D4 project |
| science/py-dimod | 0.12.22 | FreeBSD ports | DWave: Shared API for QUBO/Ising samplers |
| science/py-dipy | 1.12.1 | FreeBSD ports | Python toolbox for analysis of MR diffusion imaging |
| science/py-dlib | 20.0.1 | FreeBSD ports | Machine learning framework written in C++ (python bindings) |
| science/py-dwave-cloud-client | 0.14.8 | FreeBSD ports | DWave: REST interface to communicate with D-Wave Solver API servers |
| science/py-dwave-gate | 0.6.0 | FreeBSD ports | DWave: Gate model library |
| science/py-dwave-graphs | 1.2.0 | FreeBSD ports | D-Wave: Library for graph theory and algorithms |
| science/py-dwave-greedy | 0.3.0_3 | FreeBSD ports | DWave: Greedy binary quadratic model solvers |
| science/py-dwave-hybrid | 0.6.16 | FreeBSD ports | DWave: Hybrid asynchronous decomposition sampler prototype framework |
| science/py-dwave-inspector | 0.5.5_2 | FreeBSD ports | DWave: Problem Inspector |
| science/py-dwave-neal | 0.6.0_3 | FreeBSD ports | DWave: Simulated annealing sampler for general Ising model graphs |
| science/py-dwave-networkx | 0.8.19_2 | FreeBSD ports | DWave: Extension of the NetworkX Python package for graphs |
| science/py-dwave-ocean-sdk | 9.5.0 | FreeBSD ports | DWave: Meta-package for D-Wave's Ocean tools |
| science/py-dwave-optimization | 0.7.3 | FreeBSD ports | DWave: Nonlinear models for industrial optimization problems |
| science/py-dwave-preprocessing | 0.6.11_2 | FreeBSD ports | DWave: Preprocessing tools to aid in solving binary quadratic models |
| science/py-dwave-samplers | 1.8.0 | FreeBSD ports | DWave: Classical algorithms for solving binary quadratic models |
| science/py-dwave-system | 1.36.0 | FreeBSD ports | DWave: API for incorporating the D-Wave system as a sampler |
| science/py-dwave-tabu | 0.5.0_3 | FreeBSD ports | DWave: Tabu solver for QUBO/Ising problems |
| science/py-dwavebinarycsp | 0.3.1 | FreeBSD ports | DWave: Map CSP with binary variables to binary quadratic models |
| science/py-earthpy | 1.0.0 | FreeBSD ports | Plot and manipulate spatial data in Python |
| science/py-eccodes | 2.48.0 | FreeBSD ports | Python interface to the ecCodes BUFR and GRIB de/encoder |
| science/py-emmet-core | 0.87.2 | FreeBSD ports | Materials API Toolkit for the Materials Project |
| science/py-endf | 0.1.12 | FreeBSD ports | Python interface to ENDF-6 and ACE format nuclear data files |
| science/py-esda | 2.10.0 | FreeBSD ports | Exploratory Spatial Data Analysis |
| science/py-fresnel | 0.13.8 | FreeBSD ports | Publication quality path tracing in real time |
| science/py-gemmi | 0.7.5_1 | FreeBSD ports | Macromolecular crystallography library and utilities |
| science/py-geolinks | 0.2.3_1 | FreeBSD ports | Utilities to deal with geospatial links |
| science/py-geomet | 1.1.0 | FreeBSD ports | GeoJSON <-> WKT/WKB conversion utilities |
| science/py-geometer | 0.4.2_3 | FreeBSD ports | Python geometry package based on projective geometry and numpy |
| science/py-geometric | 1.1.1 | FreeBSD ports | Geometry optimization for quantum chemistry |
| science/py-gpaw | 26.7.0 | FreeBSD ports | DFT and beyond within the projector-augmented wave method in chemistry |
| science/py-gsd | 5.0.1 | FreeBSD ports | GSD (General Simulation Data) file format for Python |
| science/py-gwlearn | 0.2.0 | FreeBSD ports | Geographically weighted modeling based on scikit-learn |
| science/py-h5json | 2.0.0 | FreeBSD ports | Tools and library for representing HDF5 in JSON |
| science/py-h5netcdf | 1.8.1 | FreeBSD ports | netCDF4 via h5py |
| science/py-h5py | 3.16.0_1 | FreeBSD ports | General-purpose Python interface to the HDF5 library |
| science/py-h5pyd | 1.0.0 | FreeBSD ports | H5py compatible client lib for HDF REST API |
| science/py-hdmf | 6.2.0 | FreeBSD ports | Hierarchical data modeling framework for modern science data standards |
| science/py-hiPhive | 1.5_2 | FreeBSD ports | High-order force constants for the masses |
| science/py-hoomd-blue | 7.2.0 | FreeBSD ports | Molecular dynamics and Monte Carlo soft matter simulation |
| science/py-icet | 4.0 | FreeBSD ports | Pythonic approach to alloy cluster expansions |
| science/py-igor2 | 0.5.13 | FreeBSD ports | Interface for reading binary IGOR files |
| science/py-inequality | 1.2.0 | FreeBSD ports | Spatial inequality analysis for PySAL |
| science/py-ipygany | 0.5.0_6 | FreeBSD ports | 3-D scientific visualization in Jupyter Notebooks |
| science/py-jupyter_jsmol | 2022.1.0_3 | FreeBSD ports | JSmol viewer widget for Jupyter Notebooks and JupyterLab |
| science/py-kim-query | 4.0.0 | FreeBSD ports | Helper routines for querying the OpenKIM repository |
| science/py-kimpy | 2.1.4 | FreeBSD ports | Python interface to the KIM-API |
| science/py-kinematics | 0.1.7_4 | FreeBSD ports | Python module to do attitude kinematics |
| science/py-kliff | 1.0.1.45 | FreeBSD ports | KIM-based Learning-Integrated Fitting Framework |
| science/py-klusta | 3.0.16 | FreeBSD ports | Spike detection and automatic clustering for spike sorting |
| science/py-kpLib | 1.1.1_3 | FreeBSD ports | Library for finding optimal Generalized Monkhorst-Pack k-points grid |
| science/py-liac-arff | 2.5.0_1 | FreeBSD ports | Read and write ARFF files in Python |
| science/py-libgetar | 1.1.7_2 | FreeBSD ports | Library to read and write GEneric Trajectory ARchives |
| science/py-libpysal | 4.15.0_1 | FreeBSD ports | Core components of PySAL A library of spatial analysis functions |
| science/py-libwignernj | 0.8.0 | FreeBSD ports | Python bindings for libwignernj |
| science/py-lifelines | 0.19.5_6 | FreeBSD ports | Survival analysis in Python |
| science/py-mercantile | 1.2.1_1 | FreeBSD ports | Web mercator XYZ tile utilities |
| science/py-meshio | 5.3.5_2 | FreeBSD ports | I/O for many mesh formats |
| science/py-mmcif | 1.2.0 | FreeBSD ports | Library for accessing mmCIF data |
| science/py-mmtf-python | 1.1.3_4 | FreeBSD ports | MMTF (Macromolecular Transmission Format) Python API |
| science/py-mne | 1.13.2 | FreeBSD ports | Python project for MEG and EEG data analysis |
| science/py-morphio | 3.4.2 | FreeBSD ports | Neuron morphology IO library |
| science/py-mp-api | 0.46.5 | FreeBSD ports | API for server for the Materials Project |
| science/py-mpcontribs-client | 5.10.5 | FreeBSD ports | Client library for MPContribs API on contribs-api.materialsproject.org |
| science/py-mplhep | 1.3.3 | FreeBSD ports | Matplotlib styles for HEP |
| science/py-mplhep-data | 0.1.0 | FreeBSD ports | Font (Data) sub-package for mplhep |
| science/py-mrchem | 1.1.4 | FreeBSD ports | MultiResolution Chemistry |
| science/py-ncrystal | 4.4.6 | FreeBSD ports | Library for thermal neutron transport in crystals and other materials |
| science/py-neo | 0.14.5 | FreeBSD ports | Package for representing electrophysiology data in Python |
| science/py-netCDF4 | 1.7.2_2 | FreeBSD ports | Python Interface to the NetCDF Library (versions 3 and 4) |
| science/py-netcdf-flattener | 1.2.0_2 | FreeBSD ports | Flatten NetCDF files while preserving references |
| science/py-nglview | 4.0.1 | FreeBSD ports | IPython widget to view molecular structures and trajectories |
| science/py-nibabel | 5.4.2 | FreeBSD ports | Read/write some common neuroimaging file formats |
| science/py-nixio | 1.5.4 | FreeBSD ports | Python reimplementation of NIX data format |
| science/py-obspy | 1.5.0_1 | FreeBSD ports | Python framework for seismological observatories |
| science/py-oddt | 0.7_5 | FreeBSD ports | Open Drug Discovery Toolkit |
| science/py-openbabel | 3.2.1 | FreeBSD ports | Chemical toolbox designed to speak the many languages of chemical data |
| science/py-openpiv | 0.25.5 | FreeBSD ports | Python module for Particle Image Velocimetry |
| science/py-optking | 0.5.0_1 | FreeBSD ports | Python version of the PSI4 geometry optimization program by R.A. King |
| science/py-paida | 3.2.1.2.10_2 | FreeBSD ports | Pure Python scientific analysis package |
| science/py-paramz | 0.10.0 | FreeBSD ports | Parameterization framework |
| science/py-penaltymodel | 1.3.0_2 | FreeBSD ports | DWave: Utilities and interfaces for using penalty models |
| science/py-periodictable | 2.1.0_2 | FreeBSD ports | Extensible periodic table of the elements pre-populated with data |
| science/py-phono3py | 4.8.2 | FreeBSD ports | Software to calculate phonon-phonon interaction and related properties |
| science/py-phonopy | 4.8.3 | FreeBSD ports | Package for phonon calculations at harmonic and quasi-harmonic levels |
| science/py-phonors | 0.6.0_1 | FreeBSD ports | Rust kernels for phonopy and phono3py |
| science/py-plumed | 2.10.0 | FreeBSD ports | Python interface to PLUMED |
| science/py-pnetcdf | 1.0.0_5 | FreeBSD ports | Object-oriented python interface to the PnetCDF library |
| science/py-probeinterface | 0.4.0 | FreeBSD ports | Python package to handle probe layout and geometry |
| science/py-psims | 1.4.0 | FreeBSD ports | Writers and controlled vocabulary manager for PSI-MS's mzML and mzIdentML standards |
| science/py-pupynere | 1.0.15_12 | FreeBSD ports | NetCDF file reader and writer |
| science/py-py3Dmol | 2.4.2_1 | FreeBSD ports | IPython interface for embedding 3Dmol.js views |
| science/py-pyaixi | 1.0.4_2 | FreeBSD ports | Implementation of the MC-AIXI-CTW AI algorithm |
| science/py-pyberny | 0.7.0 | FreeBSD ports | Optimizer of molecular geometries with respect to the total energy |
| science/py-pycsw | 2.6.2_2 | FreeBSD ports | OGC CSW server implementation |
| science/py-pydicom | 3.0.2 | FreeBSD ports | Read, modify, and write DICOM files with Python code |
| science/py-pydoe | 1.5.0 | FreeBSD ports | Design of Experiments for Python |
| science/py-pygeodesy | 26.9.9 | FreeBSD ports | Pure Python geodesy tools |
| science/py-pygeometa | 0.21.1 | FreeBSD ports | Generate metadata for geospatial datasets |
| science/py-pygmo2 | 2.20.0 | FreeBSD ports | Python platform to perform parallel computations of optimisation tasks |
| science/py-pyked | 0.5.0 | FreeBSD ports | Package for manipulating Chemical Kinetics Experimental Data files |
| science/py-pymatgen | 2026.9.24 | FreeBSD ports | Python Materials Genomics is a robust materials analysis code |
| science/py-pymatgen-analysis-alloys | 0.0.9 | FreeBSD ports | PyMatgen add-on library with classes useful for describing alloys |
| science/py-pymatgen-core | 2026.10.16 | FreeBSD ports | Python Materials Genomics core data structures and algorithms |
| science/py-pymatgen-io-validation | 0.1.4 | FreeBSD ports | IO validation for pymatgen |
| science/py-pymbd | 0.15.0 | FreeBSD ports | Many-body dispersion library |
| science/py-pymol | 3.1.0 | FreeBSD ports | OpenGL-based molecular visualization system |
| science/py-pynrrd | 1.1.3_2 | FreeBSD ports | Pure Python module for reading and writing NRRD files |
| science/py-pynwb | 4.2.0 | FreeBSD ports | Package for working with Neurodata stored in the NWB format |
| science/py-pyosf | 1.0.5_1 | FreeBSD ports | Python library for synching with OpenScienceFramework projects |
| science/py-pyphot | 2.1.1_1 | FreeBSD ports | Library for computing photometry from spectra |
| science/py-pyprecice | 3.4.0 | FreeBSD ports | Coupling library for partitioned multi-physics simulations |
| science/py-pyqubo | 1.5.0 | FreeBSD ports | DWave: Python DSL for constructing QUBOs from mathematical expressions |
| science/py-pysal | 26.7_1 | FreeBSD ports | Meta Package for PySAL - A library of spatial analysis functions |
| science/py-pyscf | 2.14.0 | FreeBSD ports | Python module for quantum chemistry |
| science/py-pyteomics | 5.0.1 | FreeBSD ports | Python modules for proteomics data analysis |
| science/py-qcelemental | 0.51.2 | FreeBSD ports | Essentials for quantum chemistry |
| science/py-qcengine | 0.51.0_2 | FreeBSD ports | Quantum chemistry program executor and IO standardizer (QCSchema) |
| science/py-qcmanybody | 0.8.0 | FreeBSD ports | Many-body expansion tools for quantum chemistry |
| science/py-qiskit | 2.5.1_2 | FreeBSD ports | Open-source SDK for working with quantum computers |
| science/py-qspin | 2.3.3_3 | FreeBSD ports | Learn quantum spin and entanglement |
| science/py-quantities | 0.16.4_2 | FreeBSD ports | Support for physical quantities with units, based on numpy |
| science/py-rmf | 1.7.2 | FreeBSD ports | Library to support reading and writing of Rich Molecular Format files |
| science/py-rmsd | 1.7.0 | FreeBSD ports | Calculate root-mean-square deviation (RMSD) between coordinate sets |
| science/py-ruffus | 2.8.4_1 | FreeBSD ports | Lightweight library for computational pipelines |
| science/py-sarkit | 1.12.0 | FreeBSD ports | Suite of SAR-related tools in Python |
| science/py-sarpy | 2.1.1 | FreeBSD ports | Read, write and process complex SAR and other associated data |
| science/py-scikit-fuzzy | 0.5.0_3 | FreeBSD ports | Fuzzy logic toolkit for SciPy |
| science/py-scikit-learn | 1.9.0_2 | FreeBSD ports | Machine learning algorithms for python |
| science/py-scikit-optimize | 0.10.2_2 | FreeBSD ports | Sequential model-based optimization toolbox |
| science/py-scikit-rf | 2.1.0 | FreeBSD ports | RF and Microwave Engineering Scikit in Python |
| science/py-scikit-sparse | 0.5.0 | FreeBSD ports | Sparse matrix package |
| science/py-scimath | 5.0.0_3 | FreeBSD ports | Scientific and Mathematical calculations |
| science/py-scipy | 1.17.1_5,1 | FreeBSD ports | Scientific tools for Python |
| science/py-scipy-stubs | 1.18.1.1 | FreeBSD ports | Type annotations for SciPy |
| science/py-scoria | 1.0.5_4 | FreeBSD ports | Lightweight molecule manipulation codebase |
| science/py-sdf | 0.1_6 | FreeBSD ports | Simple SDF mesh generation in Python |
| science/py-seekpath | 2.2.2 | FreeBSD ports | Obtain, visualize k-vector coefficients in crystal Brillouin zone |
| science/py-segregation | 2.6.0 | FreeBSD ports | Analytics for spatial and non-spatial segregation in Python |
| science/py-segyio | 1.9.14 | FreeBSD ports | Python binding for segyio, the seismic data library |
| science/py-signac | 2.4.1 | FreeBSD ports | Manage large and heterogeneous data spaces on the file system |
| science/py-sklearn-pandas | 2.2.0_4 | FreeBSD ports | Pandas integration with sklearn |
| science/py-skrebate | 0.8.4,1 | FreeBSD ports | Feature selection algorithms based on Relief-based methods |
| science/py-spaghetti | 1.7.6_2 | FreeBSD ports | Analysis of Network-constrained Spatial Data |
| science/py-spglib | 2.8.0 | FreeBSD ports | Library for finding and handling crystal symmetries (python binding) |
| science/py-spml | 0.2.2 | FreeBSD ports | Spatial machine learning |
| science/py-symfc | 1.7.3 | FreeBSD ports | Generate symmetrized force constants |
| science/py-tensorflow | 2.21.0_4 | FreeBSD ports | Computation using data flow graphs for scalable machine learning |
| science/py-thewalrus | 0.22.0 | FreeBSD ports | Open source library for hafnian calculation |
| science/py-tobler | 0.14.0 | FreeBSD ports | Areal Interpolation |
| science/py-trainstation | 1.2 | FreeBSD ports | Convenient training of linear models |
| science/py-trx-python | 0.6 | FreeBSD ports | Experiments with new file format for tractography |
| science/py-tweedledum | 1.2.0 | FreeBSD ports | Library for analysis, compilation, synthesis of quantum circuits |
| science/py-vedo | 2026.6.1_1 | FreeBSD ports | Python module for scientific analysis and visualization of 3D objects |
| science/py-veusz | 4.2.1 | FreeBSD ports | Scientific plotting package |
| science/py-xbout | 0.4.0 | FreeBSD ports | Collect data from BOUT++ runs in python using xarray |
| science/pybrain | 0.3.3_6 | FreeBSD ports | Swiss Army knife for neural networking |
| science/pynn | 0.12.3_3 | FreeBSD ports | Simulator-independent language for building neuronal network models |
| science/q | 6.0_2 | FreeBSD ports | Molecular Dynamics (MD) tools |
| science/qbox | 1.79.0 | FreeBSD ports | First-principles molecular dynamics code |
| science/qcl | 0.6.7 | FreeBSD ports | Quantum computer simulator |
| science/qiskit-aer | 0.16.0.1_5 | FreeBSD ports | Quantum circuits simulator submodule of the Qiskit framework |
| science/qmcpack | 4.1.0_4 | FreeBSD ports | Many-body ab initio Quantum Monte Carlo code for quantum chemistry |
| science/qt6-quick3dphysics | 6.11.2 | FreeBSD ports | High-level API for physics simulation |
| science/quantum-espresso | 7.6 | FreeBSD ports | Package for research in electronic structure, simulation, optimization |
| science/quantum-espresso-pseudopotentials | g20220916 | FreeBSD ports | Pseudopotentials for use with Quantum Espresso |
| science/quantum-jet | 0.2.2.2_5 | FreeBSD ports | Cross-platform header-only library for simulating quantum circuits |
| science/qwalk | 1.0.1.300_6 | FreeBSD ports | Quantum Monte Carlo package for quantum chemistry computations |
| science/rdkit | 2026.03.6 | FreeBSD ports | Collection of cheminformatics and machine-learning software |
| science/rmf | 1.7.2_1 | FreeBSD ports | Library to support reading and writing of Rich Molecular Format files |
| science/rubygem-ai4r | 1.13 | FreeBSD ports | Various Ruby artificial intelligence algorithm implementations |
| science/rubygem-cdo | 1.5.1_1 | FreeBSD ports | Ruby binding to CDO (Climate Data Operators) |
| science/rubygem-rgeo | 3.1.0 | FreeBSD ports | Geospatial data library for Ruby (RGeo) |
| science/rubygem-rgeo-geojson | 2.2.0 | FreeBSD ports | GeoJSON formatting and parsing in Ruby |
| science/rubygem-rgeo-proj4 | 5.0.0_1 | FreeBSD ports | Proj.4 extension for RGeo |
| science/rubygem-rgeo-shapefile | 3.1.0_1 | FreeBSD ports | RGeo module for reading the ESRI shapefile format |
| science/rubygem-ruby-netcdf | 0.8.0_1 | FreeBSD ports | Ruby interface to the NetCDF scientific IO library |
| science/salome-configuration | 9.15.0 | FreeBSD ports | Salome Project: Multi-physics simulations: Configuration |
| science/salome-kernel | 9.11.0_8 | FreeBSD ports | Salome Project: Multi-physics simulations: Kernel |
| science/scidavis | 2.9.2_3 | FreeBSD ports | Scientific data analysis and visualization |
| science/sciplot | 0.3.1 | FreeBSD ports | Modern C++ scientific plotting library powered by gnuplot |
| science/seacas | 2025.10.14_1 | FreeBSD ports | Sandia Engineering Analysis Code Access System (SEACAS) |
| science/segyio | 1.9.14 | FreeBSD ports | Library to interact with SEG-Y & Seismic Unix formatted seismic data |
| science/shelxle | 1.0.1861 | FreeBSD ports | Graphical user interface for small-molecule structure refinement |
| science/siconos | 4.5.0_4 | FreeBSD ports | Simulation framework for nonsmooth dynamical systems |
| science/siesta | 5.4.2_1 | FreeBSD ports | Program to perform efficient electronic structure calculations |
| science/sigrok-cli | 0.7.2_2 | FreeBSD ports | Framework for hardware logic analyzers, CLI client |
| science/sigrok-firmware | 20150123 | FreeBSD ports | Sigrok firmware |
| science/sigrok-firmware-fx2lafw | 0.1.7 | FreeBSD ports | Cypress FX2 firmware for hardware logic analyzers |
| science/sigrok-firmware-utils | 20140418_3 | FreeBSD ports | Sigrok firmware extraction utilities |
| science/silo | 4.12.1_1 | FreeBSD ports | Mesh and field I/O library and scientific database |
| science/simbody | 3.8.80.a3.f10 | FreeBSD ports | Multibody dynamics library for (bio)mechanical systems simulation |
| science/simgrid | 4.1_2 | FreeBSD ports | Simulator of the behavior of large-scale distributed systems |
| science/simint | 0.8 | FreeBSD ports | Obara-Saika (OS) method of calculating electron repulsion integrals |
| science/simlib | 3.09 | FreeBSD ports | SIMulation LIBrary for C++ programming language |
| science/simple-dftd3 | 1.4.0 | FreeBSD ports | Reimplementation of the DFT-D3 program |
| science/simsmith | 9.9_3 | FreeBSD ports | Java-based Smith Chart program |
| science/sirius | 7.11.1_2 | FreeBSD ports | Domain specific library for electronic structure calculations |
| science/smith | 0.1.0_1 | FreeBSD ports | High order nonlinear thermomechanical simulation code |
| science/smoldyn | 2.75_1 | FreeBSD ports | Biochemical simulator for molecular diffusion, surface interactions |
| science/sparta | 2024.09.4 | FreeBSD ports | Gas simulator: SPARTA DSMC software package |
| science/spglib | 2.8.0 | FreeBSD ports | C library for finding and handling crystal symmetries |
| science/spheral | 2026.06.0_6 | FreeBSD ports | Environment for hydrodynamical & gravitational numerical simulations |
| science/step | 26.08.2 | FreeBSD ports | KDE interactive physics simulator |
| science/sz3 | 3.3.2_2 | FreeBSD ports | Modular Error-bounded Lossy Compression Framework for Scientific Datasets |
| science/tblite | 0.7.0 | FreeBSD ports | Light-weight tight-binding framework |
| science/teem | 1.11.0 | FreeBSD ports | Libraries for representing, processing and visualizing scientific data |
| science/tfel | 5.1.0_2 | FreeBSD ports | Code generation tool dedicated to material knowledge |
| science/tfel-edf | 3.2.1.1_12 | FreeBSD ports | Code generation tool dedicated to material knowledge |
| science/thermofun | 0.7.1 | FreeBSD ports | Code for calculating thermodynamic properties of materials |
| science/tinker | 26.1.2 | FreeBSD ports | General purpose molecular modelling package |
| science/trilinos | 16.2.0_1 | FreeBSD ports | Solver for multi-physics engineering and scientific problems |
| science/ttk | 1.4.0_2 | FreeBSD ports | Topology ToolKit: Topological data analysis and visualization |
| science/tweedledum | 1.1.1 | FreeBSD ports | Library for analysis, compilation, synthesis of quantum circuits |
| science/udunits | 2.2.28 | FreeBSD ports | Library for manipulating units of physical quantities |
| science/ukrmol+ | 3.2_7 | FreeBSD ports | Code to compute electron and positron scattering from molecules |
| science/v_sim | 3.9.1_3 | FreeBSD ports | Visualization of atomic structures |
| science/vipster | 1.19.1.b.109_3 | FreeBSD ports | Crystalline and molecular structure visualisation program |
| science/vmd | 1.9.4_3 | FreeBSD ports | Molecular visualization program |
| science/voro++ | 0.4.6_2 | FreeBSD ports | Three-dimensional computations of the Voronoi tessellation |
| science/votca | 2026_6 | FreeBSD ports | CSG and XTP: libraries for atomistic simulations |
| science/wannier90 | 4.0.3 | FreeBSD ports | Maximally-localized Wannier functions (MLWFs) and Wannier90 |
| science/wwplot | 1.0.1_2 | FreeBSD ports | Plotting tool for experimental physics classes |
| science/wxmacmolplt | 7.7.43_5 | FreeBSD ports | Graphical user interface principally for the GAMESS program |
| science/xcfun | 2.1.1.1 | FreeBSD ports | Exchange-correlation functionals with arbitrary-order derivatives |
| science/xcrysden | 1.6.2_5 | FreeBSD ports | Crystalline and molecular structure visualisation program |
| science/xdrawchem | 2.0.1 | FreeBSD ports | Two-dimensional molecule drawing program |
| science/xtb | 6.7.1 | FreeBSD ports | Semiempirical Extended Tight-Binding Program Package |
| science/yoda | 2.1.4 | FreeBSD ports | Particle physics package with classes for data analysis, histogramming |
| science/zotero | 9.0.4 | FreeBSD ports | Reference management for bibliographic data and research materials |
| x11-toolkits/py-fonticon-fontawesome6 | 6.4.0 | FreeBSD ports | FontAwesome 6 extension for superqt font icons |