BSD Portsscience/mmdb2 2.0.22 FreeBSD
C++ toolkit for working with macromolecular coordinate files
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- License
- GPLv3, LGPL3
- Categories
- science
- Package size
- 437.9 KiB, 1716.9 KiB installed
Description
MMDB is designed to assist developers in working with macromolecular coordinate files. The library handles both PDB and mmCIF format files.
The Library also features an internal binary format, portable between different platforms. This is achieved at uniformity of the Library's interface functions, so that there is no difference in handling different formats.
MMDB provides various high-level tools for working with coordinate files, including reading and writing, orthogonal-fractional transforms, generation of symmetry mates, editing the molecular structure and more.
MMDB is written by Eugene Krissinel, and is distributed as a part of the CCP4 suite. This project maintains a current stand-alone version of the library.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | science/mmdb2 | 2.0.22 |
| DragonFly | science/mmdb2 | 2.0.20 |
Install
Binary package:
pkg install mmdb2From the ports tree:
cd /usr/ports/science/mmdb2/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= mmdb2>0:science/mmdb2
LIB_DEPENDS= libmmdb2.so:science/mmdb2Packages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 2.0.22 | 2.0.22 | 2.0.22 | 2.0.22 | 2.0.22 |
| FreeBSD:14:quarterly | 2.0.22 | 2.0.22 | n/a | 2.0.22 | 2.0.22 |
| FreeBSD:15:latest | 2.0.22 | 2.0.22 | n/a | 2.0.22 | 2.0.22 |
| FreeBSD:15:quarterly | 2.0.22 | 2.0.22 | n/a | n/a | n/a |
| FreeBSD:16:latest | 2.0.22 | 2.0.22 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
The Makefile names none itself; they come from USES and USE_*.
The full lists below include those, and their dependencies in turn.
Build dependencies 3
Required by 3
Configuration
No options to configure.
- USES
- gmake libtool
- Service scripts
- none
Files
pkg-plist 38
- include/mmdb2/hybrid_36.h
- include/mmdb2/mmdb_atom.h
- include/mmdb2/mmdb_bondmngr.h
- include/mmdb2/mmdb_chain.h
- include/mmdb2/mmdb_cifdefs.h
- include/mmdb2/mmdb_coormngr.h
- include/mmdb2/mmdb_cryst.h
- include/mmdb2/mmdb_defs.h
- include/mmdb2/mmdb_ficif.h
- include/mmdb2/mmdb_io_file.h
- include/mmdb2/mmdb_io_stream.h
- include/mmdb2/mmdb_machine_.h
- include/mmdb2/mmdb_manager.h
- include/mmdb2/mmdb_mask.h
- include/mmdb2/mmdb_math_.h
- include/mmdb2/mmdb_math_align.h
- include/mmdb2/mmdb_math_bfgsmin.h
- include/mmdb2/mmdb_math_fft.h
- include/mmdb2/mmdb_math_graph.h
- include/mmdb2/mmdb_math_linalg.h
- include/mmdb2/mmdb_math_rand.h
- include/mmdb2/mmdb_mattype.h
- include/mmdb2/mmdb_mmcif_.h
- include/mmdb2/mmdb_model.h
- include/mmdb2/mmdb_root.h
- include/mmdb2/mmdb_rwbrook.h
- include/mmdb2/mmdb_selmngr.h
- include/mmdb2/mmdb_seqsuperpose.h
- include/mmdb2/mmdb_symop.h
- include/mmdb2/mmdb_tables.h
- include/mmdb2/mmdb_title.h
- include/mmdb2/mmdb_uddata.h
- include/mmdb2/mmdb_utils.h
- include/mmdb2/mmdb_xml_.h
- lib/libmmdb2.so
- lib/libmmdb2.so.0
- lib/libmmdb2.so.0.0.0
- libdata/pkgconfig/mmdb2.pc
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| mmdb2-2.0.22.tar.gz | 737837 | a9646933ce9f34633e1ae4901f2383af0e5318d6490851328f5b6aa06195ab51 |
Master sites 1
- https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/dependencies/
Commit history 0
No commits in the history this site was built from.