science/libssm 1.4.0_4 FreeBSD
C++ toolkit for superposition of macromolecules
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- License
- GPLv3
- Categories
- science
Description
SSM is a macromolecular coordinate superposition library, written by Eugene Krissinel of the EBI.
The library implements the SSM algorithm of protein structure comparison in three dimensions, which includes an original procedure of matching graphs built on the protein's secondary-structure elements, followed by an iterative three-dimensional alignment of protein backbone Calpha atoms.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | science/libssm | 1.4.0_4 |
| DragonFly | science/libssm | 1.4.0_2 |
Install
Binary package:
pkg install libssmFrom the ports tree:
cd /usr/ports/science/libssm/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= libssm>0:science/libssm
LIB_DEPENDS= libssm.so:science/libssmPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | - | 1.4.0_4 | - | 1.4.0_4 | 1.4.0_4 |
| FreeBSD:14:quarterly | - | 1.4.0_4 | n/a | 1.4.0_4 | 1.4.0_4 |
| FreeBSD:15:latest | - | 1.4.0_4 | n/a | 1.4.0_4 | 1.4.0_4 |
| FreeBSD:15:quarterly | - | 1.4.0_4 | n/a | n/a | n/a |
| FreeBSD:16:latest | - | 1.4.0_4 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Library 2
libccp4c.so: science/libccp4libmmdb2.so: science/mmdb2
The full lists below include those, and their dependencies in turn.
Build dependencies 12
Run dependencies 10
No port depends on this one.
Configuration
No options to configure.
- USES
- gmake libtool localbase:ldflags
- Service scripts
- none
Files
pkg-plist 12
- bin/superpose
- include/ssm/ssm_align.h
- include/ssm/ssm_csia.h
- include/ssm/ssm_defs.h
- include/ssm/ssm_graph.h
- include/ssm/ssm_malign.h
- include/ssm/ssm_superpose.h
- include/ssm/ssm_vxedge.h
- lib/libssm.so
- lib/libssm.so.2
- lib/libssm.so.2.0.0
- libdata/pkgconfig/ssm.pc
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| ssm-1.4.0.tar.gz | 431780 | dea88fd6a2716702ba064ca7c5889d98ee994b1d76227634cb3f7228893a8238 |
Master sites 1
- ftp://ftp.ccp4.ac.uk/opensource/
Commit history 0
No commits in the history this site was built from.