science/gemmi 0.7.5_1
Macromolecular crystallography library and utilities
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
24b2776499- License
- MPL20
- Categories
- science
- Package size
- 1933.6 KiB, 5798.7 KiB installed
Description
Gemmi is a library, accompanied by a set of programs, developed primarily for use in macromolecular crystallography (MX). For working with: * macromolecular models (content of PDB, PDBx/mmCIF and mmJSON files), * refinement restraints (CIF files), * reflection data (MTZ and mmCIF formats), * data on a 3D grid (electron density maps, masks, MRC/CCP4 format) * crystallographic symmetry.
Install
As a binary package — by origin, or by package name:
pkg install science/gemmi
pkg install gemmiFrom the ports tree:
cd /usr/ports/science/gemmi/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= gemmi>0:science/gemmi
LIB_DEPENDS= libgemmi_cpp.so:science/gemmiPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 0.7.5_1 | 0.7.5_1 | 0.5.8 | 0.7.3 | 0.7.5_1 |
| FreeBSD:14:quarterly | 0.7.5_1 | 0.7.5_1 | n/a | 0.7.1 | 0.7.5_1 |
| FreeBSD:15:latest | 0.7.5_1 | 0.7.5_1 | n/a | 0.7.3 | 0.7.3 |
| FreeBSD:15:quarterly | 0.7.5_1 | 0.7.5_1 | n/a | n/a | n/a |
| FreeBSD:16:latest | 0.7.5_1 | 0.7.5_1 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
The Makefile names none itself; they come from USES and USE_*.
The full lists below include those, and their dependencies in turn.
All build dependencies 15
Required by 1
Configuration
Options name: science_gemmi
| Option | Default | Description |
|---|---|---|
| FORTRAN | off | Fortran language support |
- USES
- cmake:testing compiler:c++20-lang
- Service scripts
- none
Files
pkg-plist 271
- bin/gemmi
- include/gemmi/ace_cc.hpp
- include/gemmi/ace_graph.hpp
- include/gemmi/acedrg_tables.hpp
- include/gemmi/addends.hpp
- include/gemmi/align.hpp
- include/gemmi/assembly.hpp
- include/gemmi/asudata.hpp
- include/gemmi/asumask.hpp
- include/gemmi/atof.hpp
- include/gemmi/atox.hpp
- include/gemmi/bessel.hpp
- include/gemmi/binner.hpp
- include/gemmi/blob.hpp
- include/gemmi/bond_idx.hpp
- include/gemmi/c4322.hpp
- include/gemmi/calculate.hpp
- include/gemmi/ccp4.hpp
- include/gemmi/cellred.hpp
- include/gemmi/chemcomp.hpp
- include/gemmi/cif.hpp
- include/gemmi/cif2mtz.hpp
- include/gemmi/cifdoc.hpp
- include/gemmi/contact.hpp
- include/gemmi/crd.hpp
- include/gemmi/ddl.hpp
- include/gemmi/dencalc.hpp
- include/gemmi/dirwalk.hpp
- include/gemmi/dssp.hpp
- include/gemmi/ecalc.hpp
- include/gemmi/eig3.hpp
- include/gemmi/elem.hpp
- include/gemmi/enumstr.hpp
- include/gemmi/fail.hpp
- include/gemmi/fileutil.hpp
- include/gemmi/flat.hpp
- include/gemmi/floodfill.hpp
- include/gemmi/formfact.hpp
- include/gemmi/fourier.hpp
- include/gemmi/fprime.hpp
- include/gemmi/fstream.hpp
- include/gemmi/glob.hpp
- include/gemmi/grid.hpp
- include/gemmi/gz.hpp
- include/gemmi/input.hpp
- include/gemmi/intensit.hpp
- include/gemmi/interop.hpp
- include/gemmi/it92.hpp
- include/gemmi/iterator.hpp
- include/gemmi/json.hpp
- include/gemmi/levmar.hpp
- include/gemmi/linkhunt.hpp
- include/gemmi/logger.hpp
- include/gemmi/math.hpp
- include/gemmi/metadata.hpp
- include/gemmi/mmcif.hpp
- include/gemmi/mmcif_impl.hpp
- include/gemmi/mmdb.hpp
- include/gemmi/mmread.hpp
- include/gemmi/mmread_gz.hpp
- include/gemmi/model.hpp
- include/gemmi/modify.hpp
- include/gemmi/monlib.hpp
- include/gemmi/mtz.hpp
- include/gemmi/mtz2cif.hpp
- include/gemmi/neighbor.hpp
- include/gemmi/neutron92.hpp
- include/gemmi/numb.hpp
- include/gemmi/pdb.hpp
- include/gemmi/pdb_id.hpp
- include/gemmi/pirfasta.hpp
- include/gemmi/polyheur.hpp
- include/gemmi/pymol_select.hpp
- include/gemmi/qcp.hpp
- include/gemmi/read_cif.hpp
- include/gemmi/recgrid.hpp
- include/gemmi/reciproc.hpp
- include/gemmi/refln.hpp
- include/gemmi/resinfo.hpp
- include/gemmi/riding_h.hpp
- include/gemmi/scaling.hpp
- include/gemmi/select.hpp
- include/gemmi/seqalign.hpp
- include/gemmi/seqid.hpp
- include/gemmi/seqtools.hpp
- include/gemmi/serialize.hpp
- include/gemmi/sfcalc.hpp
- include/gemmi/small.hpp
- include/gemmi/smcif.hpp
- include/gemmi/solmask.hpp
- include/gemmi/span.hpp
- include/gemmi/sprintf.hpp
- include/gemmi/stats.hpp
- include/gemmi/symmetry.hpp
- include/gemmi/third_party/fast_float.h
- include/gemmi/third_party/half.hpp
- include/gemmi/third_party/pocketfft_hdronly.h
- include/gemmi/third_party/tao/LICENSE
- include/gemmi/third_party/tao/NOTES
- include/gemmi/third_party/tao/pegtl.hpp
The first 100 are listed.
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| project-gemmi-gemmi-v0.7.5_GH0.tar.gz | 2.096501e+06 | 9e2a8a51e62c69bf43f62aadf527ca4312860de8a36c12a8747d3e8ae556f0b3 |