BSD Portsscience/py-klusta 3.0.16 FreeBSD
Spike detection and automatic clustering for spike sorting
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- License
- BSD3CLAUSE
- Categories
- science, python
- Package size
- 201.0 KiB, 967.1 KiB installed
Description
Klusta is an open source package for automatic spike sorting of multielectrode neurophysiological recordings. It implements spike detection, automatic clustering, and manual curation interfaces for analyzing electrophysiology data from probes containing up to a few dozen recording sites.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | science/py-klusta | 3.0.16 |
| HardenedBSD | science/py-klusta | 3.0.16 |
| GhostBSD | science/py-klusta | 3.0.16 |
Install
Binary package:
pkg install py312-klustaFrom the ports tree:
cd /usr/ports/science/py-klusta/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= py312-klusta>0:science/py-klustaPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 3.0.16 | 3.0.16 | - | - | 3.0.16 |
| FreeBSD:14:quarterly | 3.0.16 | 3.0.16 | n/a | - | 3.0.16 |
| FreeBSD:15:latest | 3.0.16 | 3.0.16 | n/a | - | - |
| FreeBSD:15:quarterly | 3.0.16 | 3.0.16 | n/a | n/a | n/a |
| FreeBSD:16:latest | 3.0.16 | 3.0.16 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Build 2
${PYTHON_PKGNAMEPREFIX}setuptools>0: devel/py-setuptools${PYTHON_PKGNAMEPREFIX}wheel>0: devel/py-wheel
Runtime 4
${PYTHON_PKGNAMEPREFIX}numpy>0: math/py-numpy${PYTHON_PKGNAMEPREFIX}requests>0: www/py-requests${PYTHON_PKGNAMEPREFIX}scipy>0: science/py-scipy${PYTHON_PKGNAMEPREFIX}six>0: devel/py-six
Test 1
${PYTHON_PKGNAMEPREFIX}responses>0: devel/py-responses
The full lists below include those, and their dependencies in turn.
Build dependencies 16
Run dependencies 25
- archivers/liblz4
- archivers/zstd
- devel/binutils
- devel/gettext-runtime
- devel/libffi
- devel/py-six
- devel/readline
- dns/py-idna
- lang/gcc14
- lang/python312
- math/gmp
- math/mpc
- math/mpdecimal
- math/mpfr
- math/openblas
- math/py-numpy
- math/qhull
- net/py-pysocks
- net/py-urllib3
- print/indexinfo
- science/py-scipy
- security/py-certifi
- textproc/expat2
- textproc/py-charset-normalizer
- www/py-requests
No port depends on this one.
Configuration
No options to configure.
- USES
- python
- Service scripts
- none
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| klusta-3.0.16.tar.gz | 69775 | 544e7c68467206198a9896910060f74ea73a6278447e2606d4a02cce80f041a1 |
Master sites 1
- PYPI
Commit history 0
No commits in the history this site was built from.