BSD Portsscience/opsin 3.0.20190223_4 FreeBSD
Open Parser for Systematic IUPAC Nomenclature of chemical names
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- License
- MIT
- Categories
- science, java
- Package size
- 6721.6 KiB, 7201.9 KiB installed
Description
OPSIN (Open Parser for Systematic IUPAC Nomenclature) is a freely available, open-source Java library designed to accurately interpret systematic IUPAC chemical nomenclature and convert it into chemical structures. It offers high precision and recall for organic chemical names, including complex heterocycles and stereochemistry.
OPSIN supports multiple output formats such as SMILES, InChI, and CML, and can also generate PNG, SVG, and JSON. It can be deployed as a web service, a local command-line application for bulk conversion, or integrated into other systems via third-party Python libraries. Its extensible design and robust parsing mechanism make it a valuable tool for chemical information extraction from scientific literature and patents, research and development, and populating chemical databases.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | science/opsin | 3.0.20190223_4 |
| DragonFly | science/opsin | 3.0.20190223_1 |
Install
Binary package:
pkg install opsinFrom the ports tree:
cd /usr/ports/science/opsin/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= opsin>0:science/opsinPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 3.0.20190223_4 | 3.0.20190223_4 | - | - | 3.0.20190223_4 |
| FreeBSD:14:quarterly | 3.0.20190223_4 | 3.0.20190223_4 | n/a | - | 3.0.20190223_4 |
| FreeBSD:15:latest | 3.0.20190223_4 | 3.0.20190223_4 | n/a | - | 3.0.20190223_1 |
| FreeBSD:15:quarterly | 3.0.20190223_4 | 3.0.20190223_4 | n/a | n/a | n/a |
| FreeBSD:16:latest | 3.0.20190223_4 | 3.0.20190223_4 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Build 1
maven38>0: devel/maven38
The full lists below include those, and their dependencies in turn.
Build dependencies 55
- archivers/brotli
- archivers/libdeflate
- archivers/liblz4
- archivers/zstd
- audio/alsa-lib
- converters/libiconv
- devel/gettext-runtime
- devel/glib20
- devel/libffi
- devel/libinotify
- devel/maven-wrapper
- devel/maven38
- devel/pcre2
- devel/py-packaging
- devel/readline
- graphics/giflib
- graphics/graphite2
- graphics/jbigkit
- graphics/jpeg-turbo
- graphics/lcms2
- graphics/lerc
- graphics/png
- graphics/tiff
- java/javavmwrapper
- java/openjdk21
- lang/python312
- lang/python315
- math/mpdecimal
- print/freetype2
- print/harfbuzz
- print/indexinfo
- textproc/expat2
- x11-fonts/dejavu
- x11-fonts/encodings
- x11-fonts/font-bh-ttf
- x11-fonts/font-misc-ethiopic
- x11-fonts/font-misc-meltho
- x11-fonts/fontconfig
- x11-fonts/libfontenc
- x11-fonts/mkfontscale
- x11-fonts/xorg-fonts-truetype
- x11-toolkits/libXt
- x11/libICE
- x11/libSM
- x11/libX11
- x11/libXau
- x11/libXdmcp
- x11/libXext
- x11/libXfixes
- x11/libXi
- x11/libXrandr
- x11/libXrender
- x11/libXtst
- x11/libxcb
- x11/xorgproto
Run dependencies 53
- archivers/brotli
- archivers/libdeflate
- archivers/liblz4
- archivers/zstd
- audio/alsa-lib
- converters/libiconv
- devel/gettext-runtime
- devel/glib20
- devel/libffi
- devel/libinotify
- devel/pcre2
- devel/py-packaging
- devel/readline
- graphics/giflib
- graphics/graphite2
- graphics/jbigkit
- graphics/jpeg-turbo
- graphics/lcms2
- graphics/lerc
- graphics/png
- graphics/tiff
- java/javavmwrapper
- java/openjdk21
- lang/python312
- lang/python315
- math/mpdecimal
- print/freetype2
- print/harfbuzz
- print/indexinfo
- textproc/expat2
- x11-fonts/dejavu
- x11-fonts/encodings
- x11-fonts/font-bh-ttf
- x11-fonts/font-misc-ethiopic
- x11-fonts/font-misc-meltho
- x11-fonts/fontconfig
- x11-fonts/libfontenc
- x11-fonts/mkfontscale
- x11-fonts/xorg-fonts-truetype
- x11-toolkits/libXt
- x11/libICE
- x11/libSM
- x11/libX11
- x11/libXau
- x11/libXdmcp
- x11/libXext
- x11/libXfixes
- x11/libXi
- x11/libXrandr
- x11/libXrender
- x11/libXtst
- x11/libxcb
- x11/xorgproto
No port depends on this one.
Configuration
No options to configure.
- USES
- java
- Service scripts
- none
Files
distinfo 2
| File | Size | SHA256 |
|---|---|---|
| opsin-3.0.20190223.tar.gz | 1.795658e+06 | 9b92f214399948f265b40e0929f74ac27675251ea78472229027449df45382c5 |
| opsin-3.0.20190223-deps.tar.gz | 2.039537e+07 | b8699fa1e990a66e98460b18e4c4521207e9ed84d065c518b1247ac685f94579 |
Master sites 1
- https://bitbucket.org/dan2097/opsin/get/9b25f7546b67${EXTRACT_SUFX}?dummy=/:src
Commit history 0
No commits in the history this site was built from.