science/gromacs 2026.3 FreeBSD

• gmx(1)
• gmx-anaeig(1)
• gmx-analyze(1)
• gmx-angle(1)
• gmx-awh(1)
• gmx-bar(1)
• gmx-bundle(1)
• gmx-check(1)
• gmx-chi(1)
• gmx-cluster(1)
• gmx-clustsize(1)
• gmx-confrms(1)
• gmx-convert-tpr(1)
• gmx-convert-trj(1)
• gmx-covar(1)
• gmx-current(1)
• gmx-density(1)
• gmx-densmap(1)
• gmx-densorder(1)
• gmx-dielectric(1)
• gmx-dipoles(1)
• gmx-disre(1)
• gmx-distance(1)
• gmx-dos(1)
• gmx-dssp(1)
• gmx-dump(1)
• gmx-dyecoupl(1)
• gmx-editconf(1)
• gmx-eneconv(1)
• gmx-enemat(1)
• gmx-energy(1)
• gmx-extract-cluster(1)
• gmx-filter(1)
• gmx-freevolume(1)
• gmx-gangle(1)
• gmx-genconf(1)
• gmx-genion(1)
• gmx-genrestr(1)
• gmx-grompp(1)
• gmx-gyrate(1)
• gmx-gyrate-legacy(1)
• gmx-h2order(1)
• gmx-hbond(1)
• gmx-hbond-legacy(1)
• gmx-helix(1)
• gmx-helixorient(1)
• gmx-help(1)
• gmx-hydorder(1)
• gmx-insert-molecules(1)
• gmx-lie(1)
• gmx-make_edi(1)
• gmx-make_ndx(1)
• gmx-mdmat(1)
• gmx-mdrun(1)
• gmx-mindist(1)
• gmx-mk_angndx(1)
• gmx-msd(1)
• gmx-nmeig(1)
• gmx-nmens(1)
• gmx-nmr(1)
• gmx-nmtraj(1)
• gmx-nonbonded-benchmark(1)
• gmx-order(1)
• gmx-pairdist(1)
• gmx-pdb2gmx(1)
• gmx-pme_error(1)
• gmx-polystat(1)
• gmx-potential(1)
• gmx-principal(1)
• gmx-rama(1)
• gmx-rdf(1)
• gmx-report-methods(1)
• gmx-rms(1)
• gmx-rmsdist(1)
• gmx-rmsf(1)
• gmx-rotacf(1)
• gmx-rotmat(1)
• gmx-saltbr(1)
• gmx-sans-legacy(1)
• gmx-sasa(1)
• gmx-saxs-legacy(1)
• gmx-scattering(1)
• gmx-select(1)
• gmx-sham(1)
• gmx-sigeps(1)
• gmx-solvate(1)
• gmx-sorient(1)
• gmx-spatial(1)
• gmx-spol(1)
• gmx-tcaf(1)
• gmx-traj(1)
• gmx-trajectory(1)
• gmx-trjcat(1)
• gmx-trjconv(1)
• gmx-trjorder(1)
• gmx-tune_pme(1)
• gmx-vanhove(1)
• gmx-velacc(1)
• gmx-wham(1)
• gmx-wheel(1)
• gmx-x2top(1)
• gmx-xpm2ps(1)

• bin/GMXRC
• bin/GMXRC.bash
• bin/GMXRC.csh
• bin/GMXRC.zsh
• bin/demux.pl
• bin/gmx-completion-gmx.bash
• bin/gmx-completion.bash
• bin/gmx
• bin/xplor2gmx.pl
• include/gmxapi/compat/mdparams.h
• include/gmxapi/compat/tpr.h
• include/gmxapi/context.h
• include/gmxapi/exceptions.h
• include/gmxapi/gmxapi.h
• include/gmxapi/gmxapicompat.h
• include/gmxapi/gromacsfwd.h
• include/gmxapi/md.h
• include/gmxapi/md/mdmodule.h
• include/gmxapi/md/mdsignals.h
• include/gmxapi/mpi/gmxapi_mpi.h
• include/gmxapi/mpi/resourceassignment.h
• include/gmxapi/session.h
• include/gmxapi/session/resources.h
• include/gmxapi/status.h
• include/gmxapi/system.h
• include/gmxapi/version.h
• include/gromacs/analysisdata/abstractdata.h
• include/gromacs/analysisdata/analysisdata.h
• include/gromacs/analysisdata/arraydata.h
• include/gromacs/analysisdata/dataframe.h
• include/gromacs/analysisdata/datamodule.h
• include/gromacs/analysisdata/modules/average.h
• include/gromacs/analysisdata/modules/displacement.h
• include/gromacs/analysisdata/modules/histogram.h
• include/gromacs/analysisdata/modules/lifetime.h
• include/gromacs/analysisdata/modules/plot.h
• include/gromacs/external/boost/stl_interfaces/fwd.hpp
• include/gromacs/external/boost/stl_interfaces/iterator_interface.hpp
• include/gromacs/fileio/confio.h
• include/gromacs/fileio/filetypes.h
• include/gromacs/fileio/oenv.h
• include/gromacs/fileio/pdbio.h
• include/gromacs/fileio/tpxio.h
• include/gromacs/fileio/trxio.h
• include/gromacs/libgromacs_export.h
• include/gromacs/math/do_fit.h
• include/gromacs/math/functions.h
• include/gromacs/math/units.h
• include/gromacs/math/utilities.h
• include/gromacs/mdrun/simulationinputhandle.h
• include/gromacs/mdtypes/inputrec.h
• include/gromacs/mdtypes/md_enums.h
• include/gromacs/options/abstractoption.h
• include/gromacs/options/basicoptions.h
• include/gromacs/options/filenameoption.h
• include/gromacs/options/filenameoptionmanager.h
• include/gromacs/options/ioptionsbehavior.h
• include/gromacs/options/ioptionscontainer.h
• include/gromacs/options/ioptionscontainerwithsections.h
• include/gromacs/options/ivaluestore.h
• include/gromacs/options/optionfiletype.h
• include/gromacs/options/optionflags.h
• include/gromacs/options/options.h
• include/gromacs/options/timeunitmanager.h
• include/gromacs/pbcutil/pbc.h
• include/gromacs/restraint/restraintpotential.h
• include/gromacs/selection/indexutil.h
• include/gromacs/selection/nbsearch.h
• include/gromacs/selection/position.h
• include/gromacs/selection/selection.h
• include/gromacs/selection/selectioncollection.h
• include/gromacs/selection/selectionenums.h
• include/gromacs/selection/selectionoption.h
• include/gromacs/selection/selectionoptionbehavior.h
• include/gromacs/selection/selectionoptionmanager.h
• include/gromacs/topology/atomprop.h
• include/gromacs/topology/atoms.h
• include/gromacs/topology/block.h
• include/gromacs/topology/forcefieldparameters.h
• include/gromacs/topology/idef.h
• include/gromacs/topology/ifunc.h
• include/gromacs/topology/index.h
• include/gromacs/topology/symtab.h
• include/gromacs/topology/topology.h
• include/gromacs/topology/topology_enums.h
• include/gromacs/trajectory/trajectoryframe.h
• include/gromacs/trajectoryanalysis/analysismodule.h
• include/gromacs/trajectoryanalysis/analysissettings.h
• include/gromacs/trajectoryanalysis/cmdlinerunner.h
• include/gromacs/trajectoryanalysis/topologyinformation.h
• include/gromacs/utility/arrayref.h
• include/gromacs/utility/basedefinitions.h
• include/gromacs/utility/baseversion.h
• include/gromacs/utility/classhelpers.h
• include/gromacs/utility/current_function.h
• include/gromacs/utility/enumerationhelpers.h
• include/gromacs/utility/exceptions.h
• include/gromacs/utility/fileptr.h
• include/gromacs/utility/flags.h
• include/gromacs/utility/futil.h

The first 100 are listed.

• https://ftp.gromacs.org/pub/gromacs/