science/py-nglview 4.0.1 FreeBSD
IPython widget to view molecular structures and trajectories
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- License
- MIT
- Categories
- science, python
- Package size
- 8014.6 KiB, 35177.4 KiB installed
Description
nglview is an IPython/Jupyter widget to interactively view molecular structures and trajectories. Utilizes the embeddable NGL Viewer for rendering. Support for showing data from the file-system, RCSB PDB, simpletraj and from objects of analysis libraries mdtraj, pytraj, mdanalysis, ParmEd, rdkit, ase, HTMD, biopython, cctbx, pyrosetta, schrodinger's Structure.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | science/py-nglview | 4.0.1 |
| DragonFly | science/py-nglview | 3.1.2 |
Install
Binary package:
pkg install py312-nglview
From the ports tree:
cd /usr/ports/science/py-nglview/ && make install clean
To depend on this port in another port's Makefile:
RUN_DEPENDS= py312-nglview>0:science/py-nglview
Packages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 4.0.1 | 4.0.1 | - | 3.1.2 | 4.0.1 |
| FreeBSD:14:quarterly | 4.0.1 | 4.0.1 | n/a | 3.1.2 | 4.0.1 |
| FreeBSD:15:latest | 4.0.1 | 4.0.1 | n/a | 3.1.2 | 3.1.2 |
| FreeBSD:15:quarterly | 4.0.1 | 4.0.1 | n/a | n/a | n/a |
| FreeBSD:16:latest | 4.0.1 | 4.0.1 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Build 3
${PYTHON_PKGNAMEPREFIX}jupyter-packaging>=0.7.9: devel/py-jupyter-packaging${PYTHON_PKGNAMEPREFIX}setuptools-scm>0: devel/py-setuptools-scm${PYTHON_PKGNAMEPREFIX}wheel>0: devel/py-wheel
Runtime 5
${PYTHON_PKGNAMEPREFIX}ipywidgets>=8: devel/py-ipywidgets${PYTHON_PKGNAMEPREFIX}jupyterlab>=3: devel/py-jupyterlab${PYTHON_PKGNAMEPREFIX}jupyterlab-widgets>0: devel/py-jupyterlab-widgets${PYTHON_PKGNAMEPREFIX}numpy>=1.16: math/py-numpy${PYTHON_PKGNAMEPREFIX}notebook>=7: www/py-notebook
Test 1
${PYTHON_PKGNAMEPREFIX}ipywidgets>0: devel/py-ipywidgets
The full lists below include those, and their dependencies in turn.
Build dependencies 20
- archivers/liblz4
- archivers/zstd
- devel/gettext-runtime
- devel/libffi
- devel/py-build
- devel/py-deprecation
- devel/py-installer
- devel/py-jupyter-packaging
- devel/py-packaging
- devel/py-pyproject-hooks
- devel/py-setuptools
- devel/py-setuptools-scm
- devel/py-wheel
- devel/readline
- lang/python312
- lang/python315
- math/mpdecimal
- print/indexinfo
- textproc/expat2
- textproc/py-tomlkit
Run dependencies 165
- archivers/liblz4
- archivers/zstd
- comms/py-pyserial
- converters/libiconv
- converters/py-webencodings
- databases/py-sqlite3
- databases/sqlite3
- deskutils/py-send2trash
- devel/binutils
- devel/desktop-file-utils
- devel/gettext-runtime
- devel/glib20
- devel/ipython
- devel/libedit
- devel/libffi
- devel/libinotify
- devel/pcre2
- devel/py-Automat
- devel/py-Jinja2
- devel/py-anyio
- devel/py-appdirs
- devel/py-arrow
- devel/py-asttokens
- devel/py-async-lru
- devel/py-async_generator
- devel/py-async_timeout
- devel/py-attrs
- devel/py-babel
- devel/py-cffi
- devel/py-comm
- devel/py-constantly
- devel/py-curio
- devel/py-debugpy
- devel/py-defusedxml
- devel/py-executing
- devel/py-fastjsonschema
- devel/py-incremental
- devel/py-ipykernel
- devel/py-ipython-pygments-lexers
- devel/py-ipython_genutils
- devel/py-ipywidgets
- devel/py-isoduration
- devel/py-jedi
- devel/py-json5
- devel/py-jsonpointer
- devel/py-jsonschema
- devel/py-jsonschema-specifications
- devel/py-jupyter-builder
- devel/py-jupyter-client
- devel/py-jupyter-core
- devel/py-jupyter-events
- devel/py-jupyter-lsp
- devel/py-jupyter-server
- devel/py-jupyter-server-terminals
- devel/py-jupyterlab
- devel/py-jupyterlab-server
- devel/py-jupyterlab-widgets
- devel/py-lark
- devel/py-lxml
- devel/py-nbclient
- devel/py-nbconvert
- devel/py-nbformat
- devel/py-nest-asyncio2
- devel/py-notebook-shim
- devel/py-outcome
- devel/py-packaging
- devel/py-platformdirs
- devel/py-prompt-toolkit
- devel/py-pure-eval
- devel/py-pycparser
- devel/py-python-dateutil
- devel/py-python-json-logger
- devel/py-pyyaml
- devel/py-referencing
- devel/py-rfc3339-validator
- devel/py-rfc3986-validator
- devel/py-rpds-py
- devel/py-six
- devel/py-sniffio
- devel/py-sortedcontainers
- devel/py-stack-data
- devel/py-traitlets
- devel/py-twisted
- devel/py-typing-extensions
- devel/py-tzdata
- devel/py-wcwidth
- devel/py-wheel
- devel/py-widgetsnbextension
- devel/py-zope.interface
- devel/readline
- dns/py-idna
- graphics/py-webcolors
- lang/gcc14
- lang/python312
- lang/python315
- lang/tcl86
- math/gmp
- math/libtommath
- math/mpc
- math/mpdecimal
The first 100 are listed.
Configuration
No options to configure.
- USES
- python
- Service scripts
- none
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| nglview-4.0.1.tar.gz | 2.6194241e+07 | 1e15b819b9f8ada3e521e587d24cc3754573203cc99ee5d801cef28d992865a5 |
Master sites 1
- PYPI
Commit history 0
No commits in the history this site was built from.