science/py-ruffus 2.8.4_1
Lightweight library for computational pipelines
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- License
- MIT
- Categories
- science, python
- Package size
- 401.9 KiB, 3133.9 KiB installed
Description
The Ruffus module is a lightweight way to add support for running computational pipelines.
Computational pipelines are often conceptually quite simple, especially if we breakdown the process into simple stages, or separate tasks.
Each stage or task in a computational pipeline is represented by a Python function. Each Python function can be called in parallel to run multiple jobs.
Ruffus was originally designed for use in bioinformatics to analyse multiple genome data sets.
Install
As a binary package — by origin, or by package name:
pkg install science/py-ruffus
pkg install py312-ruffus
From the ports tree:
cd /usr/ports/science/py-ruffus/ && make install clean
To depend on this port in another port's Makefile:
RUN_DEPENDS= py312-ruffus>0:science/py-ruffus
Packages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 2.8.4_1 | 2.8.4_1 | 2.8.3 | 2.8.4_1 | 2.8.4_1 |
| FreeBSD:14:quarterly | 2.8.4_1 | 2.8.4_1 | n/a | 2.8.4_1 | 2.8.4_1 |
| FreeBSD:15:latest | 2.8.4_1 | 2.8.4_1 | n/a | 2.8.4_1 | 2.8.4_1 |
| FreeBSD:15:quarterly | 2.8.4_1 | 2.8.4_1 | n/a | n/a | n/a |
| FreeBSD:16:latest | 2.8.4_1 | 2.8.4_1 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Build 1
${PYTHON_PKGNAMEPREFIX}sqlite3>0: databases/py-sqlite3
Runtime 1
${PYTHON_PKGNAMEPREFIX}sqlite3>0: databases/py-sqlite3
The full lists below include those, and their dependencies in turn.
All build dependencies 16
All run dependencies 15
No port depends on this one.
Configuration
No options to configure.
- USES
- python shebangfix
- Service scripts
- none
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| ruffus-2.8.4.tar.gz | 1.2147217e+07 | 6cd3d96e459a1aedcc10341f14fddedfdc13664551757fcd429a241de63826aa |
Master sites 1
- PYPI
Commit history 0
No commits in the history this site was built from.