FreeBSD Ports

science/py-ruffus 2.8.4_1

Lightweight library for computational pipelines

Repository
FreeBSD ports
Maintainer
[email protected]
License
MIT
Categories
science, python
Package size
401.9 KiB, 3133.9 KiB installed

Description

The Ruffus module is a lightweight way to add support for running computational pipelines.

Computational pipelines are often conceptually quite simple, especially if we breakdown the process into simple stages, or separate tasks.

Each stage or task in a computational pipeline is represented by a Python function. Each Python function can be called in parallel to run multiple jobs.

Ruffus was originally designed for use in bioinformatics to analyse multiple genome data sets.

Install

As a binary package — by origin, or by package name:

pkg install science/py-ruffus
pkg install py312-ruffus

From the ports tree:

cd /usr/ports/science/py-ruffus/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	py312-ruffus>0:science/py-ruffus

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repositoryaarch64amd64armv6armv7i386
FreeBSD:14:latest2.8.4_12.8.4_12.8.32.8.4_12.8.4_1
FreeBSD:14:quarterly2.8.4_12.8.4_1n/a2.8.4_12.8.4_1
FreeBSD:15:latest2.8.4_12.8.4_1n/a2.8.4_12.8.4_1
FreeBSD:15:quarterly2.8.4_12.8.4_1n/an/an/a
FreeBSD:16:latest2.8.4_12.8.4_1n/an/an/a
FreeBSD:16:quarterlyn/an/an/an/an/a

Dependencies

As this port's Makefile names them.

Build 1

Runtime 1

The full lists below include those, and their dependencies in turn.

All build dependencies 16
All run dependencies 15

No port depends on this one.

Configuration

No options to configure.

USES
python shebangfix
Service scripts
none

Files

distinfo 1
FileSizeSHA256
ruffus-2.8.4.tar.gz1.2147217e+076cd3d96e459a1aedcc10341f14fddedfdc13664551757fcd429a241de63826aa
Master sites 1
  • PYPI

Commit history 0

No commits in the history this site was built from.