BSD Ports

science/apbs 3.4.1 FreeBSD

Electrostatic and solvation properties for complex molecules

System
FreeBSD
Repository
FreeBSD ports
Maintainer
[email protected]
Last update
Commit
39d05190d5
License
MIT
Categories
science
Package size
60716.6 KiB, 89125.7 KiB installed

Description

APBS and PDB2PQR: electrostatic and solvation properties for complex molecules.

APBS solves the equations of continuum electrostatics for large biomolecular assemblages. This software was designed "from the ground up" using modern design principles to ensure its ability to interface with other computational packages and evolve as methods and applications change over time.

In the other systems

SystemPortVersion
FreeBSDscience/apbs3.4.1
DragonFlyscience/apbs1.5.102

Install

Binary package:

pkg install apbs

From the ports tree:

cd /usr/ports/science/apbs/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	apbs>0:science/apbs
LIB_DEPENDS=	libapbs_fem.so:science/apbs

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repositoryaarch64amd64armv6armv7i386
FreeBSD:14:latest3.4.13.4.11.5.1021.5.1023.4.1
FreeBSD:14:quarterly3.4.13.4.1n/a1.5.1023.4.1
FreeBSD:15:latest3.4.13.4.1n/a1.5.1021.5.102
FreeBSD:15:quarterly3.4.13.4.1n/an/an/a
FreeBSD:16:latest3.4.13.4.1n/an/an/a
FreeBSD:16:quarterlyn/an/an/an/an/a

Dependencies

As this port's Makefile names them.

Library 3

The full lists below include those, and their dependencies in turn.

Build dependencies 45
Run dependencies 33

No port depends on this one.

Configuration

No options to configure.

USES
cmake shebangfix gettext-runtime
Service scripts
none

Files

pkg-plist 655
  • bin/apbs
  • include/apbs.h
  • include/fem/vcsm.h
  • include/fem/vfetk.h
  • include/fem/vpee.h
  • include/gamer/biom.h
  • include/gamer/gamer.h
  • include/gamer/gamer_base.h
  • include/gamer/tetgen.h
  • include/gamer/triangle.h
  • include/generic/apolparm.h
  • include/generic/bemparm.h
  • include/generic/femparm.h
  • include/generic/geoflowparm.h
  • include/generic/mgparm.h
  • include/generic/nosh.h
  • include/generic/pbamparm.h
  • include/generic/pbeparm.h
  • include/generic/pbsamparm.h
  • include/generic/vacc.h
  • include/generic/valist.h
  • include/generic/vatom.h
  • include/generic/vcap.h
  • include/generic/vclist.h
  • include/generic/vgreen.h
  • include/generic/vhal.h
  • include/generic/vmatrix.h
  • include/generic/vparam.h
  • include/generic/vpbe.h
  • include/generic/vstring.h
  • include/generic/vunit.h
  • include/maloc/maloc.h
  • include/maloc/maloc_base.h
  • include/maloc/psh.h
  • include/maloc/vcom.h
  • include/maloc/vio.h
  • include/maloc/vmem.h
  • include/maloc/vmp.h
  • include/maloc/vmpi.h
  • include/maloc/vnm.h
  • include/maloc/vpred.h
  • include/maloc/vset.h
  • include/maloc/vsh.h
  • include/maloc/vsys.h
  • include/mc/am.h
  • include/mc/aprx.h
  • include/mc/bam.h
  • include/mc/bmat.h
  • include/mc/bnode.h
  • include/mc/bvec.h
  • include/mc/dyn.h
  • include/mc/gem.h
  • include/mc/mat.h
  • include/mc/mc.h
  • include/mc/mc_base.h
  • include/mc/mcsh.h
  • include/mc/mtool.h
  • include/mc/nam.h
  • include/mc/node.h
  • include/mc/pde.h
  • include/mc/re.h
  • include/mc/slu.h
  • include/mc/vec.h
  • include/mc/vec3.h
  • include/mc/vel.h
  • include/mc/ves.h
  • include/mc/whb.h
  • include/mc/zslu.h
  • include/mg/vgrid.h
  • include/mg/vmgrid.h
  • include/mg/vopot.h
  • include/mg/vpmg.h
  • include/mg/vpmgp.h
  • include/pmgc/buildAd.h
  • include/pmgc/buildBd.h
  • include/pmgc/buildGd.h
  • include/pmgc/buildPd.h
  • include/pmgc/cgd.h
  • include/pmgc/gsd.h
  • include/pmgc/matvecd.h
  • include/pmgc/mgcsd.h
  • include/pmgc/mgdrvd.h
  • include/pmgc/mgfasd.h
  • include/pmgc/mgsubd.h
  • include/pmgc/mikpckd.h
  • include/pmgc/mlinpckd.h
  • include/pmgc/mypdec.h
  • include/pmgc/newdrvd.h
  • include/pmgc/newtond.h
  • include/pmgc/powerd.h
  • include/pmgc/smoothd.h
  • include/punc/punc.h
  • include/punc/punc_base.h
  • include/punc/punc_base_p.h
  • include/punc/punccf.h
  • include/punc/varpack.h
  • include/punc/vblas.h
  • include/punc/vcgcode.h
  • include/punc/vf2c.h
  • include/punc/vlapack.h

The first 100 are listed.

distinfo 6
FileSizeSHA256
Electrostatics-apbs-v3.4.1_GH0.tar.gz8.5806314e+07644e6246fd37c9dd4172fc7be1763337082ab8584dbcd53e738c831b62c89bb2
Electrostatics-FETK-57195e55351e04ce6ee0ef56a143c996a9aee7e2_GH0.tar.gz2.7763972e+07d9affc573b1f5410a7d2dd550a6d9a05a349d3c52e2c5615084e850ed684e6f6
Electrostatics-geoflow_c-e8ce510_GH0.tar.gz4560927e38916e141771b71a43cebf0739911905531100df59a9fb913626a35753c2f
Electrostatics-TABIPB-de187a4_GH0.tar.gz75628080ab3eac9697063c7dce8696f2fca4b01a75892dd45398a1cda260f22faaba1
lwwilson1-mesh_routines-ddb75cb_GH0.tar.gz3.869445e+065e58ea8c419c229efb5a7d9a1bb88ba96e62790f27f97d835262417d6b098a17
Electrostatics-pb_solvers-168a83e_GH0.tar.gz1.1187543e+070d26e4321a3297c8d6445ec551ebfc14961102e836e5ba8e9f36afd6080a7bed

Commit history 1

DateCommitCreditsLog message
39d05190d5 Yuri Victorovich science/apbs: update 1.5-102 → 3.4.1
Change to the maintained fork https://github.com/Electrostatics/apbs