BSD Portsscience/avogadro2 2.0.0_2 FreeBSD
Chemical editor and visualization application
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
b0ac6f21ea- License
- BSD3CLAUSE
- Categories
- science
- Package size
- 1637.8 KiB, 5729.5 KiB installed
Description
Avogadro 2 is a chemical editor and visualization application, it is also a set of reusable software libraries written in C++ using principles of modularity for maximum reuse. The development of the first generation Avogadro application and library is documented in our paper, and this remains the preferred method of citation at present. The motivation for rewriting Avogadro, along with improvements and changes made in Avogadro 2 are summarized in our Source article. We provide a set of permissively licensed, open source, cross platform software components in the Avogadro 2 libraries, along with an end-user application with full source code, and binaries.
The library features updated and improved rendering, where we built upon the abstraction provided by previous API, but implemented a simple scene graph. This makes use of features such as impostor sphere rendering, resulting in significant rendering speed improvements while improving the quality of the visualization. The core is built for scalability, looking to enable the analysis of larger chemical structures and simulations being produced by computational chemistry codes today. Emphasis has also been placed on making it even easier to extend, using simple Python scripts to add simulation input capabilities, and data input/output along with access to full-blown C++ plugin APIs where more control is required.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | science/avogadro2 | 2.0.0_2 |
| DragonFly | science/avogadro2 | 1.100.0 |
| GhostBSD | science/avogadro2 | 2.0.0_2 |
Install
Binary package:
pkg install avogadro2From the ports tree:
cd /usr/ports/science/avogadro2/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= avogadro2>0:science/avogadro2Packages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 2.0.0_2 | 2.0.0_2 | - | 1.100.0 | 2.0.0_2 |
| FreeBSD:14:quarterly | 2.0.0_2 | 2.0.0_2 | n/a | 1.100.0 | 2.0.0_2 |
| FreeBSD:15:latest | 2.0.0_2 | 2.0.0_2 | n/a | 1.100.0 | 1.100.0 |
| FreeBSD:15:quarterly | 2.0.0_2 | 2.0.0_2 | n/a | n/a | n/a |
| FreeBSD:16:latest | 2.0.0_2 | 2.0.0_2 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Build 1
hdf5>0: science/hdf5
Library 3
libAvogadroCore.so: science/avogadrolibslibJKQTPlotter6.so: graphics/jkqtplotterlibMoleQueueClient.so: misc/molequeue
Runtime 1
obabel: science/openbabel
The full lists below include those, and their dependencies in turn.
Build dependencies 187
- accessibility/at-spi2-core
- archivers/brotli
- archivers/libarchive
- archivers/libdeflate
- archivers/liblz4
- archivers/lzo2
- archivers/zstd
- converters/fribidi
- converters/libiconv
- databases/gdbm
- databases/postgresql18-client
- databases/qt5-sql
- databases/qt6-base_sqldriver
- databases/sqlite3
- devel/binutils
- devel/cmake-core
- devel/dbus
- devel/dbus-glib
- devel/desktop-file-utils
- devel/double-conversion
- devel/gettext-runtime
- devel/glib20
- devel/gobject-introspection
- devel/gsettings-desktop-schemas
- devel/hwloc2
- devel/icu
- devel/json-glib
- devel/jsoncpp
- devel/level-zero
- devel/libb2
- devel/libdaemon
- devel/libdatrie
- devel/libedit
- devel/libepoll-shim
- devel/libevdev
- devel/libevent
- devel/libffi
- devel/libgudev
- devel/libgusb
- devel/libinotify
- devel/libltdl
- devel/libmtdev
- devel/libpciaccess
- devel/libthai
- devel/libudev-devd
- devel/libunistring
- devel/libuv
- devel/llvm19
- devel/ninja
- devel/pcre2
- devel/pkgconf
- devel/py-evdev
- devel/py-libevdev
- devel/py-packaging
- devel/py-pyudev
- devel/py-setuptools
- devel/py-six
- devel/qt5-buildtools
- devel/qt5-core
- devel/qt5-dbus
- devel/qt5-qmake
- devel/qt5-testlib
- devel/qt6-base
- devel/qt6-tools
- devel/readline
- devel/xdg-utils
- dns/libidn2
- dns/libpsl
- ftp/curl
- graphics/cairo
- graphics/colord
- graphics/gdk-pixbuf2
- graphics/glew
- graphics/graphite2
- graphics/gtk-update-icon-cache
- graphics/jbigkit
- graphics/jkqtplotter
- graphics/jpeg-turbo
- graphics/lcms2
- graphics/lerc
- graphics/libGLU
- graphics/libdrm
- graphics/libepoxy
- graphics/libglvnd
- graphics/librsvg2-rust
- graphics/png
- graphics/qt5-opengl
- graphics/qt5-svg
- graphics/qt6-svg
- graphics/tiff
- graphics/vulkan-headers
- graphics/vulkan-loader
- graphics/wayland
- lang/duktape-lib
- lang/gcc14
- lang/lua54
- lang/perl5.42
- lang/python312
- lang/python315
- lang/tcl86
The first 100 are listed.
Run dependencies 192
- accessibility/at-spi2-core
- archivers/brotli
- archivers/libarchive
- archivers/libdeflate
- archivers/liblz4
- archivers/libmspack
- archivers/lzo2
- archivers/zstd
- converters/fribidi
- converters/libiconv
- databases/gdbm
- databases/qt5-sql
- databases/sqlite3
- devel/binutils
- devel/boost-libs
- devel/dbus
- devel/dbus-glib
- devel/desktop-file-utils
- devel/double-conversion
- devel/gettext-runtime
- devel/glib20
- devel/gobject-introspection
- devel/gsettings-desktop-schemas
- devel/hwloc2
- devel/icu
- devel/json-glib
- devel/level-zero
- devel/libb2
- devel/libdaemon
- devel/libdatrie
- devel/libedit
- devel/libepoll-shim
- devel/libevdev
- devel/libevent
- devel/libffi
- devel/libgudev
- devel/libgusb
- devel/libinotify
- devel/libltdl
- devel/libmtdev
- devel/libpciaccess
- devel/libsoup
- devel/libthai
- devel/libudev-devd
- devel/libunistring
- devel/libunwind
- devel/orc
- devel/pcre2
- devel/pkgconf
- devel/py-evdev
- devel/py-libevdev
- devel/py-packaging
- devel/py-pyudev
- devel/py-setuptools
- devel/py-six
- devel/qt5-buildtools
- devel/qt5-core
- devel/qt5-dbus
- devel/qt5-qmake
- devel/qt5-testlib
- devel/qt6-base
- devel/readline
- devel/xdg-utils
- dns/libidn2
- dns/libpsl
- ftp/curl
- graphics/cairo
- graphics/colord
- graphics/gdk-pixbuf2
- graphics/glew
- graphics/graphite2
- graphics/gtk-update-icon-cache
- graphics/jbigkit
- graphics/jkqtplotter
- graphics/jpeg-turbo
- graphics/lcms2
- graphics/lerc
- graphics/libGLU
- graphics/libdrm
- graphics/libepoxy
- graphics/libglvnd
- graphics/librsvg2-rust
- graphics/png
- graphics/qt5-opengl
- graphics/qt5-svg
- graphics/qt6-svg
- graphics/tiff
- graphics/vulkan-headers
- graphics/vulkan-loader
- graphics/wayland
- lang/duktape-lib
- lang/gcc14
- lang/lua54
- lang/perl5.42
- lang/python312
- lang/python315
- lang/tcl86
- math/blas
- math/eigen3
- math/gmp
The first 100 are listed.
No port depends on this one.
Configuration
No options to configure.
- USES
- cmake compiler:c++11-lang desktop-file-utils gl libarchive qt:6
- Service scripts
- none
Files
pkg-plist 123
- bin/avogadro2
- share/applications/org.openchemistry.Avogadro2.desktop
- share/avogadro2/i18n/avogadroapp-af.qm
- share/avogadro2/i18n/avogadroapp-ar.qm
- share/avogadro2/i18n/avogadroapp-bg.qm
- share/avogadro2/i18n/avogadroapp-bs.qm
- share/avogadro2/i18n/avogadroapp-ca.qm
- share/avogadro2/i18n/[email protected]
- share/avogadro2/i18n/avogadroapp-cs.qm
- share/avogadro2/i18n/avogadroapp-da.qm
- share/avogadro2/i18n/avogadroapp-de.qm
- share/avogadro2/i18n/avogadroapp-el.qm
- share/avogadro2/i18n/avogadroapp-en_AU.qm
- share/avogadro2/i18n/avogadroapp-en_CA.qm
- share/avogadro2/i18n/avogadroapp-en_GB.qm
- share/avogadro2/i18n/avogadroapp-eo.qm
- share/avogadro2/i18n/avogadroapp-es.qm
- share/avogadro2/i18n/avogadroapp-et.qm
- share/avogadro2/i18n/avogadroapp-eu.qm
- share/avogadro2/i18n/avogadroapp-fa.qm
- share/avogadro2/i18n/avogadroapp-fi.qm
- share/avogadro2/i18n/avogadroapp-fr.qm
- share/avogadro2/i18n/avogadroapp-fr_CA.qm
- share/avogadro2/i18n/avogadroapp-gl.qm
- share/avogadro2/i18n/avogadroapp-he.qm
- share/avogadro2/i18n/avogadroapp-hi.qm
- share/avogadro2/i18n/avogadroapp-hr.qm
- share/avogadro2/i18n/avogadroapp-hu.qm
- share/avogadro2/i18n/avogadroapp-id.qm
- share/avogadro2/i18n/avogadroapp-it.qm
- share/avogadro2/i18n/avogadroapp-ja.qm
- share/avogadro2/i18n/avogadroapp-ka.qm
- share/avogadro2/i18n/avogadroapp-kn.qm
- share/avogadro2/i18n/avogadroapp-ko.qm
- share/avogadro2/i18n/avogadroapp-ms.qm
- share/avogadro2/i18n/avogadroapp-nb.qm
- share/avogadro2/i18n/avogadroapp-nl.qm
- share/avogadro2/i18n/avogadroapp-oc.qm
- share/avogadro2/i18n/avogadroapp-pl.qm
- share/avogadro2/i18n/avogadroapp-pt.qm
- share/avogadro2/i18n/avogadroapp-pt_BR.qm
- share/avogadro2/i18n/avogadroapp-ro.qm
- share/avogadro2/i18n/avogadroapp-ru.qm
- share/avogadro2/i18n/avogadroapp-sa.qm
- share/avogadro2/i18n/avogadroapp-sk.qm
- share/avogadro2/i18n/avogadroapp-sl.qm
- share/avogadro2/i18n/avogadroapp-sq.qm
- share/avogadro2/i18n/avogadroapp-sr.qm
- share/avogadro2/i18n/avogadroapp-sv.qm
- share/avogadro2/i18n/avogadroapp-ta.qm
- share/avogadro2/i18n/avogadroapp-te.qm
- share/avogadro2/i18n/avogadroapp-th.qm
- share/avogadro2/i18n/avogadroapp-tr.qm
- share/avogadro2/i18n/avogadroapp-ug.qm
- share/avogadro2/i18n/avogadroapp-uk.qm
- share/avogadro2/i18n/avogadroapp-vi.qm
- share/avogadro2/i18n/avogadroapp-zh_CN.qm
- share/avogadro2/i18n/avogadroapp-zh_TW.qm
- share/avogadro2/i18n/avogadrolibs-af.qm
- share/avogadro2/i18n/avogadrolibs-ar.qm
- share/avogadro2/i18n/avogadrolibs-bg.qm
- share/avogadro2/i18n/avogadrolibs-bs.qm
- share/avogadro2/i18n/avogadrolibs-ca.qm
- share/avogadro2/i18n/[email protected]
- share/avogadro2/i18n/avogadrolibs-cs.qm
- share/avogadro2/i18n/avogadrolibs-da.qm
- share/avogadro2/i18n/avogadrolibs-de.qm
- share/avogadro2/i18n/avogadrolibs-el.qm
- share/avogadro2/i18n/avogadrolibs-en_AU.qm
- share/avogadro2/i18n/avogadrolibs-en_CA.qm
- share/avogadro2/i18n/avogadrolibs-en_GB.qm
- share/avogadro2/i18n/avogadrolibs-eo.qm
- share/avogadro2/i18n/avogadrolibs-es.qm
- share/avogadro2/i18n/avogadrolibs-et.qm
- share/avogadro2/i18n/avogadrolibs-eu.qm
- share/avogadro2/i18n/avogadrolibs-fa.qm
- share/avogadro2/i18n/avogadrolibs-fi.qm
- share/avogadro2/i18n/avogadrolibs-fr.qm
- share/avogadro2/i18n/avogadrolibs-fr_CA.qm
- share/avogadro2/i18n/avogadrolibs-gl.qm
- share/avogadro2/i18n/avogadrolibs-he.qm
- share/avogadro2/i18n/avogadrolibs-hi.qm
- share/avogadro2/i18n/avogadrolibs-hr.qm
- share/avogadro2/i18n/avogadrolibs-hu.qm
- share/avogadro2/i18n/avogadrolibs-id.qm
- share/avogadro2/i18n/avogadrolibs-it.qm
- share/avogadro2/i18n/avogadrolibs-ja.qm
- share/avogadro2/i18n/avogadrolibs-ka.qm
- share/avogadro2/i18n/avogadrolibs-kn.qm
- share/avogadro2/i18n/avogadrolibs-ko.qm
- share/avogadro2/i18n/avogadrolibs-lv.qm
- share/avogadro2/i18n/avogadrolibs-ms.qm
- share/avogadro2/i18n/avogadrolibs-nb.qm
- share/avogadro2/i18n/avogadrolibs-nl.qm
- share/avogadro2/i18n/avogadrolibs-oc.qm
- share/avogadro2/i18n/avogadrolibs-pl.qm
- share/avogadro2/i18n/avogadrolibs-pt.qm
- share/avogadro2/i18n/avogadrolibs-pt_BR.qm
- share/avogadro2/i18n/avogadrolibs-ro.qm
- share/avogadro2/i18n/avogadrolibs-ru.qm
The first 100 are listed.
distinfo 3
| File | Size | SHA256 |
|---|---|---|
| OpenChemistry-avogadroapp-2.0.0_GH0.tar.gz | 3.878161e+06 | df9978a8cc86b2fbf4c2bc155b87654b5953099a42717c18a85115069e05d02a |
| flathub-shared-modules-1bb5393_GH0.tar.gz | 66640 | a590c2f31dff3f258b439e210b62a1278c13b3353d64f290ebcd1d6062d8c147 |
| openchemistry-avogadro-i18n-16142cf_GH0.tar.gz | 1.03559e+06 | 706a0489fd2919cde92c41b6b5f5a42972c4d86614eea7a29d774e3bd0b68873 |
Commit history 1
| Date | Commit | Credits | Log message |
|---|---|---|---|
b0ac6f21ea |
Yuri Victorovich | science/avogadro2: Switch to Qt6 PR: 290501
Requested by: Daniel Engberg <[email protected]> |