science/py-pymol 3.1.0 FreeBSD
OpenGL-based molecular visualization system
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
d978f23b0f- License
- PyMOL
- Categories
- science, biology, python
- Package size
- 5950.2 KiB, 24923.0 KiB installed
Description
PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source PyMOL is free to everyone!
This version represents the community-supported open source distribution of the closed source commercial product PyMOL.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | science/py-pymol | 3.1.0 |
| DragonFly | science/py-pymol | 3.0.0_1 |
Install
Binary package:
pkg install py312-pymolFrom the ports tree:
cd /usr/ports/science/py-pymol/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= py312-pymol>0:science/py-pymolPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 3.0.0_4 | 3.0.0_4 | - | 3.0.0_2 | 3.0.0_4 |
| FreeBSD:14:quarterly | 3.0.0_4 | 3.0.0_4 | n/a | 3.0.0_2 | 3.0.0_4 |
| FreeBSD:15:latest | 3.0.0_4 | 3.0.0_4 | n/a | 3.0.0_2 | - |
| FreeBSD:15:quarterly | 3.0.0_4 | 3.0.0_4 | n/a | n/a | n/a |
| FreeBSD:16:latest | 3.0.0_4 | 3.0.0_4 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Build 4
${PYTHON_PKGNAMEPREFIX}numpy>=1.26.4,1: math/py-numpy${PYTHON_PKGNAMEPREFIX}wheel>=0: devel/py-wheel${LOCALBASE}/include/glm/glm.hpp: math/glm${LOCALBASE}/include/mmtf.hpp: science/mmtf-cpp
Library 3
libfreetype.so: print/freetype2libnetcdf.so: science/netcdflibpng16.so: graphics/png
Runtime 3
${PYTHON_PKGNAMEPREFIX}msgpack>0: devel/py-msgpack${PYTHON_PKGNAMEPREFIX}Pmw>0: x11-toolkits/py-Pmw${PYTHON_PKGNAMEPREFIX}numpy>=1.26.4,1: math/py-numpy
The full lists below include those, and their dependencies in turn.
Build dependencies 54
- archivers/brotli
- archivers/liblz4
- archivers/zstd
- devel/binutils
- devel/cmake-core
- devel/gettext-runtime
- devel/jsoncpp
- devel/libffi
- devel/libunistring
- devel/libuv
- devel/msgpack-cxx
- devel/pkgconf
- devel/py-build
- devel/py-installer
- devel/py-packaging
- devel/py-pyproject-hooks
- devel/py-setuptools
- devel/py-wheel
- devel/readline
- dns/libidn2
- dns/libpsl
- ftp/curl
- graphics/glew
- graphics/libGLU
- graphics/libglvnd
- graphics/png
- lang/gcc14
- lang/python312
- lang/python315
- math/glm
- math/gmp
- math/mpc
- math/mpdecimal
- math/mpfr
- math/openblas
- math/py-numpy
- ports-mgmt/pkg
- print/freetype2
- print/indexinfo
- science/hdf5
- science/libaec
- science/mmtf-cpp
- science/netcdf
- security/libssh2
- security/rhash
- textproc/expat2
- textproc/libxml2
- www/libnghttp2
- x11/libX11
- x11/libXau
- x11/libXdmcp
- x11/libXext
- x11/libxcb
- x11/xorgproto
Run dependencies 245
- accessibility/at-spi2-core
- accessibility/qt6-speech
- accessibility/speech-dispatcher
- archivers/brotli
- archivers/libdeflate
- archivers/liblz4
- archivers/lzo2
- archivers/minizip
- archivers/zstd
- audio/ebur128
- audio/espeak-ng
- audio/flac
- audio/gstreamer1-plugins-pulse
- audio/jack
- audio/lame
- audio/libogg
- audio/libsamplerate
- audio/libsndfile
- audio/libsoxr
- audio/libvorbis
- audio/mpg123
- audio/opus
- audio/pcaudiolib
- audio/pulseaudio
- audio/speexdsp
- audio/webrtc-audio-processing
- comms/qt6-connectivity
- comms/qt6-sensors
- comms/qt6-serialport
- converters/fribidi
- converters/libiconv
- databases/gdbm
- databases/postgresql18-client
- databases/qt6-base_sqldriver
- databases/sqlite3
- devel/abseil
- devel/binutils
- devel/dbus
- devel/dbus-glib
- devel/dotconf
- devel/double-conversion
- devel/gettext-runtime
- devel/glib20
- devel/gobject-introspection
- devel/gsettings-desktop-schemas
- devel/icu
- devel/json-glib
- devel/libb2
- devel/libdaemon
- devel/libdatrie
- devel/libedit
- devel/libepoll-shim
- devel/libevdev
- devel/libevent
- devel/libffi
- devel/libgudev
- devel/libgusb
- devel/libinotify
- devel/libltdl
- devel/libmtdev
- devel/libpciaccess
- devel/libsoup3
- devel/libsysinfo
- devel/libthai
- devel/libudev-devd
- devel/libunistring
- devel/libunwind
- devel/llvm19
- devel/nspr
- devel/orc
- devel/pcre2
- devel/pcsc-lite
- devel/pkgconf
- devel/py-dbus
- devel/py-evdev
- devel/py-libevdev
- devel/py-msgpack
- devel/py-packaging
- devel/py-pygobject
- devel/py-pyudev
- devel/py-qt6-pyqt
- devel/py-qt6-sip
- devel/py-setuptools
- devel/py-six
- devel/pygobject-common
- devel/qt6-base
- devel/qt6-positioning
- devel/qt6-remoteobjects
- devel/qt6-scxml
- devel/qt6-tools
- devel/qt6-translations
- devel/readline
- dns/libidn2
- dns/libpsl
- ftp/curl
- graphics/cairo
- graphics/colord
- graphics/gdk-pixbuf2
- graphics/giflib
- graphics/glew
The first 100 are listed.
No port depends on this one.
Configuration
Options name: science_pymol
| Option | Default | Description |
|---|---|---|
| QT | on | Qt toolkit support |
| TK | off | Tk GUI toolkit support |
- USES
- cmake:indirect compiler:c++11-lang gl gnome python tar:bz2
- Service scripts
- none
- Conflicts with
- ${PYTHON_PKGNAMEPREFIX}chempy
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| schrodinger-pymol-open-source-v3.1.0_GH0.tar.gz | 2.9550866e+07 | 54306d65060bd58ed8b3dab1a8af521aeb4fd417871f15f463ff05ccb4e121fe |