biology/ugene 53.1_1 FreeBSD

Integrated bioinformatics toolkit

System: FreeBSD
Repository: FreeBSD ports
Maintainer: [email protected]
License: GPLv2+
Categories: biology, science
Package size: 32975.4 KiB, 133066.1 KiB installed

Description

Unipro UGENE is multiplatform, open-source software with the main goal of assisting molecular biologists without much expertise in bioinformatics to manage, analyze, and visualize their data. UGENE integrates widely used bioinformatics tools within one common user interface.

UGENE toolkit supports multiple biological data formats and allows the retrieval of data from remote data sources. It provides visualization modules for biological objects such as annotated genome sequences, Next Generation Sequencing (NGS) assembly data, multiple sequence alignments, phylogenetic trees, and 3D structures.

In the other systems

System

Port

Version

FreeBSD

biology/ugene

53.1_1

DragonFly

biology/ugene

40.1_1

HardenedBSD

biology/ugene

53.1_1

GhostBSD

biology/ugene

53.1_1

Install

Binary package:

pkg install ugene

From the ports tree:

cd /usr/ports/biology/ugene/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	ugene>0:biology/ugene

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repository

aarch64

amd64

armv6

armv7

i386

FreeBSD:14:latest

53.1_1

FreeBSD:14:quarterly

53.1_1

n/a

53.1_1

FreeBSD:15:latest

53.1_1

n/a

40.1_1

FreeBSD:15:quarterly

53.1_1

n/a

FreeBSD:16:latest

53.1_1

n/a

FreeBSD:16:quarterly

n/a

Dependencies

As this port's Makefile names them.

Library 1

libhts.so : biology/htslib

Runtime 1

bash : shells/bash

The full lists below include those, and their dependencies in turn.

Build dependencies 107

The first 100 are listed.

Run dependencies 107

The first 100 are listed.

No port depends on this one.

Configuration

No options to configure.

USES: cmake compiler:c++14-lang desktop-file-utils gl localbase:ldflags pkgconfig qt:5 shared-mime-info shebangfix xorg
Service scripts: none

Files

Manual pages 1

ugene(1)

pkg-plist 146

bin/ugene
bin/ugenecl
bin/ugenem
bin/ugeneui
lib/ugene/libQSpec.so
lib/ugene/libU2Algorithm.so
lib/ugene/libU2Core.so
lib/ugene/libU2Designer.so
lib/ugene/libU2Formats.so
lib/ugene/libU2Gui.so
lib/ugene/libU2Lang.so
lib/ugene/libU2Private.so
lib/ugene/libU2Script.so
lib/ugene/libU2Test.so
lib/ugene/libU2View.so
lib/ugene/libqscore.a
lib/ugene/libqtscript.so
lib/ugene/libsamtools.a
lib/ugene/libugenedb.so
lib/ugene/libzlib.a
lib/ugene/plugins/CoreTests.license
lib/ugene/plugins/CoreTests.plugin
lib/ugene/plugins/GUITestBase.license
lib/ugene/plugins/GUITestBase.plugin
lib/ugene/plugins/annotator.license
lib/ugene/plugins/annotator.plugin
lib/ugene/plugins/api_tests.license
lib/ugene/plugins/api_tests.plugin
lib/ugene/plugins/ball.license
lib/ugene/plugins/ball.plugin
lib/ugene/plugins/biostruct3d_view.license
lib/ugene/plugins/biostruct3d_view.plugin
lib/ugene/plugins/chroma_view.license
lib/ugene/plugins/chroma_view.plugin
lib/ugene/plugins/circular_view.license
lib/ugene/plugins/circular_view.plugin
lib/ugene/plugins/dbi_bam.license
lib/ugene/plugins/dbi_bam.plugin
lib/ugene/plugins/dna_export.license
lib/ugene/plugins/dna_export.plugin
lib/ugene/plugins/dna_flexibility.license
lib/ugene/plugins/dna_flexibility.plugin
lib/ugene/plugins/dna_graphpack.license
lib/ugene/plugins/dna_graphpack.plugin
lib/ugene/plugins/dna_stat.license
lib/ugene/plugins/dna_stat.plugin
lib/ugene/plugins/dotplot.license
lib/ugene/plugins/dotplot.plugin
lib/ugene/plugins/enzymes.license
lib/ugene/plugins/enzymes.plugin
lib/ugene/plugins/external_tool_support.license
lib/ugene/plugins/external_tool_support.plugin
lib/ugene/plugins/genecut.license
lib/ugene/plugins/genecut.plugin
lib/ugene/plugins/genome_aligner.license
lib/ugene/plugins/genome_aligner.plugin
lib/ugene/plugins/gor4.license
lib/ugene/plugins/gor4.plugin
lib/ugene/plugins/hmm2.license
lib/ugene/plugins/hmm2.plugin
lib/ugene/plugins/libCoreTests.so
lib/ugene/plugins/libGUITestBase.so
lib/ugene/plugins/libannotator.so
lib/ugene/plugins/libapi_tests.so
lib/ugene/plugins/libball.so
lib/ugene/plugins/libbiostruct3d_view.so
lib/ugene/plugins/libchroma_view.so
lib/ugene/plugins/libcircular_view.so
lib/ugene/plugins/libdbi_bam.so
lib/ugene/plugins/libdna_export.so
lib/ugene/plugins/libdna_flexibility.so
lib/ugene/plugins/libdna_graphpack.so
lib/ugene/plugins/libdna_stat.so
lib/ugene/plugins/libdotplot.so
lib/ugene/plugins/libenzymes.so
lib/ugene/plugins/libexternal_tool_support.so
lib/ugene/plugins/libgenecut.so
lib/ugene/plugins/libgenome_aligner.so
lib/ugene/plugins/libgor4.so
lib/ugene/plugins/libhmm2.so
lib/ugene/plugins/liblinkdata_support.so
lib/ugene/plugins/liborf_marker.so
lib/ugene/plugins/libpcr.so
lib/ugene/plugins/libperf_monitor.so
lib/ugene/plugins/libphylip.so
lib/ugene/plugins/libprimer3.so
lib/ugene/plugins/libpsipred.so
lib/ugene/plugins/libptools.so
lib/ugene/plugins/libquery_designer.so
lib/ugene/plugins/libremote_blast.so
lib/ugene/plugins/librepeat_finder.so
lib/ugene/plugins/libsitecon.so
lib/ugene/plugins/libsmith_waterman.so
lib/ugene/plugins/libtest_runner.so
lib/ugene/plugins/libumuscle.so
lib/ugene/plugins/libvariants.so
lib/ugene/plugins/libweight_matrix.so
lib/ugene/plugins/libworkflow_designer.so
lib/ugene/plugins/linkdata_support.license
lib/ugene/plugins/linkdata_support.plugin

The first 100 are listed.

distinfo 1

File

Size

SHA256

ugeneunipro-ugene-53.1_GH0.tar.gz

2.7484438e+07

3eca3bc97824d855b5dfe4844b7a5d46052f98279fa015c7e152e111f89c4673

Commit history 0

No commits in the history this site was built from.