science/py-nibabel 5.4.2 FreeBSD

Read/write some common neuroimaging file formats

System: FreeBSD
Repository: FreeBSD ports
Maintainer: [email protected]
License: MIT
Categories: science, python
Package size: 3557.4 KiB, 14212.0 KiB installed

Description

This package provides read +/- write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2 and later), GIFTI, NIfTI1, NIfTI2, CIFTI-2, MINC1, MINC2, AFNI BRIK/HEAD, MGH and ECAT as well as Philips PAR/REC. We can read and write FreeSurfer geometry, annotation and morphometry files. There is some very limited support for DICOM. NiBabel is the successor of PyNIfTI.

The various image format classes give full or selective access to header (meta) information and access to the image data is made available via NumPy arrays.

In the other systems

System

Port

Version

FreeBSD

science/py-nibabel

5.4.2

DragonFly

science/py-nibabel

5.3.2

Install

Binary package:

pkg install py312-nibabel

From the ports tree:

cd /usr/ports/science/py-nibabel/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	py312-nibabel>0:science/py-nibabel

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repository	aarch64	amd64	armv6	armv7	i386
FreeBSD:14:latest	5.4.2	5.4.2	-	5.3.2	5.4.2
FreeBSD:14:quarterly	5.4.2	5.4.2	n/a	5.3.2	5.4.2
FreeBSD:15:latest	5.4.2	5.4.2	n/a	5.3.2	5.3.2
FreeBSD:15:quarterly	5.4.2	5.4.2	n/a	n/a	n/a
FreeBSD:16:latest	5.4.2	5.4.2	n/a	n/a	n/a
FreeBSD:16:quarterly	n/a	n/a	n/a	n/a	n/a

Dependencies

As this port's Makefile names them.

Build 2

${PYTHON_PKGNAMEPREFIX}hatch-vcs>0 : devel/py-hatch-vcs
${PYTHON_PKGNAMEPREFIX}hatchling>0 : devel/py-hatchling

Runtime 2

${PYTHON_PKGNAMEPREFIX}numpy>=1.25 : math/py-numpy
${PYTHON_PKGNAMEPREFIX}packaging>=17 : devel/py-packaging

Test 5

${PYTHON_PKGNAMEPREFIX}pytest-cov>0 : devel/py-pytest-cov
${PYTHON_PKGNAMEPREFIX}pytest-doctestplus>0 : devel/py-pytest-doctestplus
${PYTHON_PKGNAMEPREFIX}pytest-httpserver>0 : devel/py-pytest-httpserver
${PYTHON_PKGNAMEPREFIX}pytest-xdist>0 : devel/py-pytest-xdist
${PYTHON_PKGNAMEPREFIX}pydicom>0 : science/py-pydicom

The full lists below include those, and their dependencies in turn.

Build dependencies 22

Run dependencies 19

Required by 2

Configuration

No options to configure.

USES: python
Service scripts: none

Files

distinfo 1

File

Size

SHA256

nibabel-5.4.2.tar.gz

4.663132e+06

d5f4b9076a13178ae7f7acf18c8dbd503ee1c4d5c0c23b85df7be87efcbb49da

Master sites 1

PYPI

Commit history 0

No commits in the history this site was built from.