science/py-atomium 1.0.11_6 FreeBSD
Molecular modeller and file parser
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- License
- MIT
- Categories
- science, biology, python
- Package size
- 106.3 KiB, 578.3 KiB installed
Description
atomium is a molecular modeller and file parser, capable of reading from and writing to .pdb, .cif and .mmtf files.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | science/py-atomium | 1.0.11_6 |
| DragonFly | science/py-atomium | 1.0.11_3 |
Install
Binary package:
pkg install py312-atomium
From the ports tree:
cd /usr/ports/science/py-atomium/ && make install clean
To depend on this port in another port's Makefile:
RUN_DEPENDS= py312-atomium>0:science/py-atomium
Packages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 1.0.11_6 | 1.0.11_6 | - | 1.0.11_3 | 1.0.11_6 |
| FreeBSD:14:quarterly | 1.0.11_6 | 1.0.11_6 | n/a | 1.0.11_3 | 1.0.11_6 |
| FreeBSD:15:latest | 1.0.11_6 | 1.0.11_6 | n/a | 1.0.11_3 | 1.0.11_3 |
| FreeBSD:15:quarterly | 1.0.11_6 | 1.0.11_6 | n/a | n/a | n/a |
| FreeBSD:16:latest | 1.0.11_6 | 1.0.11_6 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Build 10
${PYTHON_PKGNAMEPREFIX}coveralls>0: devel/py-coveralls${PYTHON_PKGNAMEPREFIX}msgpack>=0.6.1: devel/py-msgpack${PYTHON_PKGNAMEPREFIX}numpy>=1.16: math/py-numpy${PYTHON_PKGNAMEPREFIX}paramiko>0: security/py-paramiko${PYTHON_PKGNAMEPREFIX}requests>0: www/py-requests${PYTHON_PKGNAMEPREFIX}rmsd>0: science/py-rmsd${PYTHON_PKGNAMEPREFIX}sphinx>0: textproc/py-sphinx${PYTHON_PKGNAMEPREFIX}sphinx_rtd_theme>0: textproc/py-sphinx_rtd_theme${PYTHON_PKGNAMEPREFIX}tqdm>0: misc/py-tqdm${PYTHON_PKGNAMEPREFIX}valerius>=0.2: biology/py-valerius
Runtime 10
${PYTHON_PKGNAMEPREFIX}coveralls>0: devel/py-coveralls${PYTHON_PKGNAMEPREFIX}msgpack>=0.6.1: devel/py-msgpack${PYTHON_PKGNAMEPREFIX}numpy>=1.16: math/py-numpy${PYTHON_PKGNAMEPREFIX}paramiko>0: security/py-paramiko${PYTHON_PKGNAMEPREFIX}requests>0: www/py-requests${PYTHON_PKGNAMEPREFIX}rmsd>0: science/py-rmsd${PYTHON_PKGNAMEPREFIX}sphinx>0: textproc/py-sphinx${PYTHON_PKGNAMEPREFIX}sphinx_rtd_theme>0: textproc/py-sphinx_rtd_theme${PYTHON_PKGNAMEPREFIX}tqdm>0: misc/py-tqdm${PYTHON_PKGNAMEPREFIX}valerius>=0.2: biology/py-valerius
The full lists below include those, and their dependencies in turn.
Build dependencies 75
- archivers/liblz4
- archivers/zstd
- biology/py-valerius
- databases/py-sqlite3
- databases/sqlite3
- devel/binutils
- devel/gettext-runtime
- devel/libedit
- devel/libffi
- devel/py-Jinja2
- devel/py-annotated-doc
- devel/py-babel
- devel/py-cffi
- devel/py-coverage
- devel/py-coveralls
- devel/py-msgpack
- devel/py-packaging
- devel/py-pyasn1
- devel/py-pycparser
- devel/py-setuptools
- devel/py-shellingham
- devel/py-typer
- devel/py-typing-extensions
- devel/py-wheel
- devel/readline
- dns/py-idna
- graphics/py-imagesize
- lang/gcc14
- lang/python312
- lang/python315
- lang/tcl86
- math/gmp
- math/libtommath
- math/mpc
- math/mpdecimal
- math/mpfr
- math/openblas
- math/py-numpy
- math/qhull
- misc/py-tqdm
- net/py-pysocks
- net/py-urllib3
- print/indexinfo
- science/py-rmsd
- science/py-scipy
- security/ca_root_nss
- security/libsodium
- security/py-bcrypt
- security/py-certifi
- security/py-cryptography
- security/py-paramiko
- security/py-pynacl
- textproc/expat2
- textproc/py-alabaster
- textproc/py-charset-normalizer
- textproc/py-docutils
- textproc/py-markdown-it-py
- textproc/py-markupsafe
- textproc/py-mdurl
- textproc/py-pygments
- textproc/py-pystemmer
- textproc/py-rich
- textproc/py-roman-numerals
- textproc/py-snowballstemmer
- textproc/py-sphinx
- textproc/py-sphinx_rtd_theme
- textproc/py-sphinxcontrib-applehelp
- textproc/py-sphinxcontrib-devhelp
- textproc/py-sphinxcontrib-htmlhelp
- textproc/py-sphinxcontrib-jquery
- textproc/py-sphinxcontrib-jsmath
- textproc/py-sphinxcontrib-qthelp
- textproc/py-sphinxcontrib-serializinghtml
- textproc/snowballstemmer
- www/py-requests
Run dependencies 74
- archivers/liblz4
- archivers/zstd
- biology/py-valerius
- databases/py-sqlite3
- databases/sqlite3
- devel/binutils
- devel/gettext-runtime
- devel/libedit
- devel/libffi
- devel/py-Jinja2
- devel/py-annotated-doc
- devel/py-babel
- devel/py-cffi
- devel/py-coverage
- devel/py-coveralls
- devel/py-msgpack
- devel/py-packaging
- devel/py-pyasn1
- devel/py-pycparser
- devel/py-shellingham
- devel/py-typer
- devel/py-typing-extensions
- devel/py-wheel
- devel/readline
- dns/py-idna
- graphics/py-imagesize
- lang/gcc14
- lang/python312
- lang/python315
- lang/tcl86
- math/gmp
- math/libtommath
- math/mpc
- math/mpdecimal
- math/mpfr
- math/openblas
- math/py-numpy
- math/qhull
- misc/py-tqdm
- net/py-pysocks
- net/py-urllib3
- print/indexinfo
- science/py-rmsd
- science/py-scipy
- security/ca_root_nss
- security/libsodium
- security/py-bcrypt
- security/py-certifi
- security/py-cryptography
- security/py-paramiko
- security/py-pynacl
- textproc/expat2
- textproc/py-alabaster
- textproc/py-charset-normalizer
- textproc/py-docutils
- textproc/py-markdown-it-py
- textproc/py-markupsafe
- textproc/py-mdurl
- textproc/py-pygments
- textproc/py-pystemmer
- textproc/py-rich
- textproc/py-roman-numerals
- textproc/py-snowballstemmer
- textproc/py-sphinx
- textproc/py-sphinx_rtd_theme
- textproc/py-sphinxcontrib-applehelp
- textproc/py-sphinxcontrib-devhelp
- textproc/py-sphinxcontrib-htmlhelp
- textproc/py-sphinxcontrib-jquery
- textproc/py-sphinxcontrib-jsmath
- textproc/py-sphinxcontrib-qthelp
- textproc/py-sphinxcontrib-serializinghtml
- textproc/snowballstemmer
- www/py-requests
No port depends on this one.
Configuration
No options to configure.
- USES
- python
- Service scripts
- none
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| samirelanduk-atomium-v1.0.11_GH0.tar.gz | 2.1454532e+07 | f26fec07ab7777032e2f829e4338021543f5ccbd76f59dc47c12decc9b1ebe88 |
Commit history 0
No commits in the history this site was built from.