BSD Portsscience/neko 1.1.2 FreeBSD
Framework for high-order spectral element flow simulations
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
5a08ccbddb- License
- BSD3CLAUSE
- Categories
- science
Description
Gemmi is a library, accompanied by a set of programs, developed primarily for use in macromolecular crystallography (MX). For working with: * macromolecular models (content of PDB, PDBx/mmCIF and mmJSON files), * refinement restraints (CIF files), * reflection data (MTZ and mmCIF formats), * data on a 3D grid (electron density maps, masks, MRC/CCP4 format) * crystallographic symmetry.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | science/neko | 1.1.2 |
| NetBSD | lang/neko | 2.3.0nb35 |
| GhostBSD | science/neko | 1.0.3_1 |
Install
Binary package:
pkg install nekoFrom the ports tree:
cd /usr/ports/science/neko/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= neko>0:science/nekoPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | - | 1.1.2 | - | - | - |
| FreeBSD:14:quarterly | - | 1.1.2 | n/a | - | - |
| FreeBSD:15:latest | - | 1.1.2 | n/a | - | - |
| FreeBSD:15:quarterly | - | 1.1.2 | n/a | n/a | n/a |
| FreeBSD:16:latest | - | 1.1.2 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Library 2
libjsonfortran.so: devel/json-fortranlibopenblas.so: math/openblas
Test 4
bash: shells/bash${PYTHON_PKGNAMEPREFIX}pytest>=0: devel/py-pytest${PYTHON_PKGNAMEPREFIX}numpy>=0: math/py-numpy${PYTHON_PKGNAMEPREFIX}json5>=0: devel/py-json5
The full lists below include those, and their dependencies in turn.
Build dependencies 28
- archivers/liblz4
- archivers/zstd
- devel/binutils
- devel/gettext-runtime
- devel/gmake
- devel/hwloc2
- devel/json-c
- devel/json-fortran
- devel/level-zero
- devel/libepoll-shim
- devel/libffi
- devel/libpciaccess
- devel/pkgconf
- devel/readline
- lang/gcc14
- lang/perl5.42
- lang/python312
- math/gmp
- math/mpc
- math/mpdecimal
- math/mpfr
- math/openblas
- misc/hwdata
- net/libfabric
- net/mpich
- print/indexinfo
- textproc/expat2
- textproc/libxml2
Run dependencies 21
No port depends on this one.
Configuration
No options to configure.
- USES
- fortran gmake libtool mpi:mpich pkgconfig python:build,test shebangfix
- Service scripts
- none
Files
Manual pages 4
- makeneko(1)
- neko(1)
- prepart(1)
- rea2nbin(1)
pkg-plist 673
- bin/adios2_to_nek5000
- bin/average_field_in_space
- bin/average_fields_in_time
- bin/calc_lift_from_field
- bin/create_periodic_zones
- bin/genmeshbox
- bin/makeneko
- bin/map_to_equidistant_1d
- bin/mesh_checker
- bin/neko
- bin/postprocess_fluid_stats
- bin/prepart
- bin/psnr
- bin/rea2nbin
- include/neko.h
- include/neko/aabb.mod
- include/neko/aabb_el_finder.mod
- include/neko/aabb_pe_finder.mod
- include/neko/aabb_tree.mod
- include/neko/ab_time_scheme.mod
- include/neko/adv_dealias.mod
- include/neko/adv_dummy.mod
- include/neko/adv_no_dealias.mod
- include/neko/adv_oifs.mod
- include/neko/advection.mod
- include/neko/ale/bcknd/device/cuda/ale_kinematics_kernel.h
- include/neko/ale/bcknd/device/hip/ale_kinematics_kernel.h
- include/neko/ale_manager.mod
- include/neko/ale_rigid_kinematics.mod
- include/neko/ale_routines_cpu.mod
- include/neko/ale_routines_device.mod
- include/neko/ax_helm.mod
- include/neko/ax_helm_cpu.mod
- include/neko/ax_helm_device.mod
- include/neko/ax_helm_full.mod
- include/neko/ax_helm_full_cpu.mod
- include/neko/ax_helm_full_device.mod
- include/neko/ax_helm_sx.mod
- include/neko/ax_helm_xsmm.mod
- include/neko/ax_product.mod
- include/neko/bc.mod
- include/neko/bc/bcknd/device/cuda/bc_utils.h
- include/neko/bc/bcknd/device/cuda/dirichlet_kernel.h
- include/neko/bc/bcknd/device/cuda/dong_outflow_kernel.h
- include/neko/bc/bcknd/device/cuda/facet_normal_kernel.h
- include/neko/bc/bcknd/device/cuda/inflow_kernel.h
- include/neko/bc/bcknd/device/cuda/inhom_dirichlet_kernel.h
- include/neko/bc/bcknd/device/cuda/neumann_kernel.h
- include/neko/bc/bcknd/device/cuda/symmetry_kernel.h
- include/neko/bc/bcknd/device/cuda/zero_dirichlet_kernel.h
- include/neko/bc/bcknd/device/hip/bc_utils.h
- include/neko/bc/bcknd/device/hip/dirichlet_kernel.h
- include/neko/bc/bcknd/device/hip/dong_outflow_kernel.h
- include/neko/bc/bcknd/device/hip/facet_normal_kernel.h
- include/neko/bc/bcknd/device/hip/inflow_kernel.h
- include/neko/bc/bcknd/device/hip/inhom_dirichlet_kernel.h
- include/neko/bc/bcknd/device/hip/neumann_kernel.h
- include/neko/bc/bcknd/device/hip/symmetry_kernel.h
- include/neko/bc/bcknd/device/hip/zero_dirichlet_kernel.h
- include/neko/bc/bcknd/device/metal/bc_shader_utils.h
- include/neko/bc/bcknd/device/metal/bc_utils.h
- include/neko/bc/bcknd/device/metal/dirichlet_kernel.metal
- include/neko/bc/bcknd/device/metal/dong_outflow_kernel.metal
- include/neko/bc/bcknd/device/metal/facet_normal_kernel.metal
- include/neko/bc/bcknd/device/metal/inflow_kernel.metal
- include/neko/bc/bcknd/device/metal/inhom_dirichlet_kernel.metal
- include/neko/bc/bcknd/device/metal/neumann_kernel.metal
- include/neko/bc/bcknd/device/metal/symmetry_kernel.metal
- include/neko/bc/bcknd/device/metal/zero_dirichlet_kernel.metal
- include/neko/bc/bcknd/device/opencl/bc_utils.h
- include/neko/bc/bcknd/device/opencl/dirichlet_kernel.cl
- include/neko/bc/bcknd/device/opencl/dong_outflow_kernel.cl
- include/neko/bc/bcknd/device/opencl/facet_normal_kernel.cl
- include/neko/bc/bcknd/device/opencl/inflow_kernel.cl
- include/neko/bc/bcknd/device/opencl/inhom_dirichlet_kernel.cl
- include/neko/bc/bcknd/device/opencl/neumann_kernel.cl
- include/neko/bc/bcknd/device/opencl/symmetry_kernel.cl
- include/neko/bc/bcknd/device/opencl/zero_dirichlet_kernel.cl
- include/neko/bc_list.mod
- include/neko/bdf_time_scheme.mod
- include/neko/bicgstab.mod
- include/neko/blasius.mod
- include/neko/boundary_flux.mod
- include/neko/boundary_operation.mod
- include/neko/boussinesq_source_term.mod
- include/neko/boussinesq_source_term_cpu.mod
- include/neko/boussinesq_source_term_device.mod
- include/neko/box_point_zone.mod
- include/neko/bp_file.mod
- include/neko/brinkman_source_term.mod
- include/neko/buffer.mod
- include/neko/buffer_1d.mod
- include/neko/buffer_4d.mod
- include/neko/buffer_4d_npar.mod
- include/neko/cacg.mod
- include/neko/cai_sagaut_model_ii.mod
- include/neko/cai_sagaut_model_ii_cpu.mod
- include/neko/cai_sagaut_model_ii_device.mod
- include/neko/cartesian_el_finder.mod
- include/neko/cartesian_pe_finder.mod
The first 100 are listed.
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| neko-1.1.2.tar.gz | 1.2441582e+07 | 7269c3fe18350fd694d5412ec990a33cf3024618683cb3d12644f5d10e64cec5 |
Master sites 1
- https://github.com/ExtremeFLOW/neko/releases/download/v1.1.2/