science/dssp 4.5.8_1 FreeBSD
Application to assign secondary structure to proteins
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
97a84ef467- License
- BSD2CLAUSE
- Categories
- science
- Package size
- 476.4 KiB, 5936.9 KiB installed
Description
dssp-4 is a rewrite of DSSP, now offering full mmCIF support. The difference with previous releases of DSSP is that it now writes out an annotated mmCIF file by default, storing the secondary structure information in the _struct_conf category.
Install
Binary package:
pkg install dsspFrom the ports tree:
cd /usr/ports/science/dssp/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= dssp>0:science/dsspPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 4.5.8_1 | 4.5.8_1 | 4.2.0 | 4.4.11_1 | 4.5.8_1 |
| FreeBSD:14:quarterly | 4.5.8_1 | 4.5.8_1 | n/a | 4.4.11_1 | 4.5.8_1 |
| FreeBSD:15:latest | 4.5.8_1 | 4.5.8_1 | n/a | 4.4.11_1 | 4.4.11_1 |
| FreeBSD:15:quarterly | 4.5.8_1 | 4.5.8_1 | n/a | n/a | n/a |
| FreeBSD:16:latest | 4.5.8_1 | 4.5.8_1 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Build 2
libmcfp>0: devel/libmcfpmrc: devel/mrc
Library 2
libboost_iostreams.so: devel/boost-libslibcifpp.so: science/libcifpp
Test 1
catch2>0: devel/catch2
The full lists below include those, and their dependencies in turn.
Build dependencies 23
- archivers/liblz4
- archivers/zstd
- databases/sqlite3
- devel/boost-libs
- devel/cmake-core
- devel/gettext-runtime
- devel/icu
- devel/jsoncpp
- devel/libedit
- devel/libmcfp
- devel/libunistring
- devel/libuv
- devel/mrc
- devel/pcre2
- dns/libidn2
- lang/tcl86
- math/libtommath
- ports-mgmt/pkg
- print/indexinfo
- science/libcifpp
- security/rhash
- shells/bash
- textproc/expat2
Run dependencies 13
No port depends on this one.
Configuration
No options to configure.
- USES
- cmake:noninja,testing compiler:c++17-lang
- Service scripts
- none
Files
Manual pages 1
- mkdssp(1)
pkg-plist 2
- bin/mkdssp
- share/man/man1/mkdssp.1.gz
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| PDB-REDO-dssp-v4.5.8_GH0.tar.gz | 225240 | 634bf8d8dd96954bd680da90f3dcb66b87189c13b12b52b61de8af9d597b74ac |