BSD Portsbiology/p5-Bio-Graphics 2.40_2 FreeBSD
Generate GD Images of Bio::Seq Objects
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- License
- ART10, GPLv1+
- Categories
- biology, perl5
- Package size
- 513.5 KiB, 1525.6 KiB installed
Description
p5-Bio-Graphics is a simple GD-based renderer (diagram drawer) for DNA and protein sequences.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | biology/p5-Bio-Graphics | 2.40_2 |
| DragonFly | biology/p5-Bio-Graphics | 2.40_2 |
Install
Binary package:
pkg install p5-Bio-GraphicsFrom the ports tree:
cd /usr/ports/biology/p5-Bio-Graphics/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= p5-Bio-Graphics>0:biology/p5-Bio-GraphicsPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 2.40_2 | 2.40_2 | 2.40_2 | 2.40_2 | 2.40_2 |
| FreeBSD:14:quarterly | 2.40_2 | 2.40_2 | n/a | 2.40_2 | 2.40_2 |
| FreeBSD:15:latest | 2.40_2 | 2.40_2 | n/a | 2.40_2 | 2.40_2 |
| FreeBSD:15:quarterly | 2.40_2 | 2.40_2 | n/a | n/a | n/a |
| FreeBSD:16:latest | 2.40_2 | 2.40_2 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Build 7
p5-Bio-Coordinate>=1.007000: biology/p5-Bio-Coordinatep5-Bio-SCF>=1.01: biology/p5-Bio-SCFp5-BioPerl>=1.007000: biology/p5-BioPerlp5-CGI>=0: www/p5-CGIp5-GD>=2.30: graphics/p5-GDp5-GD-SVG>=0.32: graphics/p5-GD-SVGp5-Statistics-Descriptive>=2.6: math/p5-Statistics-Descriptive
Runtime 7
p5-Bio-Coordinate>=1.007000: biology/p5-Bio-Coordinatep5-Bio-SCF>=1.01: biology/p5-Bio-SCFp5-BioPerl>=1.007000: biology/p5-BioPerlp5-CGI>=0: www/p5-CGIp5-GD>=2.30: graphics/p5-GDp5-GD-SVG>=0.32: graphics/p5-GD-SVGp5-Statistics-Descriptive>=2.6: math/p5-Statistics-Descriptive
The full lists below include those, and their dependencies in turn.
Build dependencies 107
- archivers/brotli
- archivers/libdeflate
- archivers/liblz4
- archivers/zstd
- biology/htslib
- biology/iolib
- biology/p5-Bio-Coordinate
- biology/p5-Bio-SCF
- biology/p5-BioPerl
- converters/libiconv
- converters/p5-Encode-Locale
- converters/p5-MIME-Base32
- converters/p5-MIME-Base64
- converters/p5-Text-Iconv
- devel/gettext-runtime
- devel/libunistring
- devel/p5-Algorithm-Diff
- devel/p5-Class-Data-Inheritable
- devel/p5-Clone
- devel/p5-Data-Stag
- devel/p5-Devel-StackTrace
- devel/p5-Exception-Class
- devel/p5-Exporter-Tiny
- devel/p5-Heap
- devel/p5-IO-HTML
- devel/p5-IO-String
- devel/p5-IO-Stringy
- devel/p5-IO-Tty
- devel/p5-IPC-Run
- devel/p5-Module-Build
- devel/p5-Set-Object
- devel/p5-Set-Scalar
- devel/p5-Sub-Uplevel
- devel/p5-Test-Deep
- devel/p5-Test-Differences
- devel/p5-Test-Exception
- devel/p5-Test-Most
- devel/p5-Test-RequiresInternet
- devel/p5-Test-Warn
- devel/p5-Tie-IxHash
- devel/p5-TimeDate
- devel/readline
- dns/libidn2
- dns/libpsl
- ftp/curl
- graphics/gd
- graphics/giflib
- graphics/jbigkit
- graphics/jpeg-turbo
- graphics/lerc
- graphics/p5-GD
- graphics/p5-GD-SVG
- graphics/png
- graphics/tiff
- graphics/webp
- lang/p5-Error
- lang/p5-List-MoreUtils
- lang/p5-List-MoreUtils-XS
- lang/p5-Try-Tiny
- lang/perl5.42
- math/p5-Graph
- math/p5-Statistics-Descriptive
- net/p5-Net-HTTP
- net/p5-URI
- print/freetype2
- print/indexinfo
- security/libssh2
- security/p5-Authen-NTLM
- security/p5-Digest-HMAC
- security/p5-IO-Socket-SSL
- security/p5-Net-SSLeay
- sysutils/p5-File-Listing
- sysutils/p5-File-Which
- textproc/expat2
- textproc/libxml2
- textproc/p5-HTML-Entities-Numbered
- textproc/p5-SVG
- textproc/p5-Text-Diff
- textproc/p5-XML-DOM
- textproc/p5-XML-Filter-BufferText
- textproc/p5-XML-LibXML
- textproc/p5-XML-NamespaceSupport
- textproc/p5-XML-Parser
- textproc/p5-XML-RegExp
- textproc/p5-XML-SAX
- textproc/p5-XML-SAX-Base
- textproc/p5-XML-SAX-Writer
- textproc/p5-XML-Twig
- textproc/p5-XML-Writer
- textproc/p5-XML-XPath
- textproc/p5-XML-XPathEngine
- textproc/p5-YAML
- textproc/p5-libxml
- www/libnghttp2
- www/p5-CGI
- www/p5-HTML-Parser
- www/p5-HTML-Tagset
- www/p5-HTML-Tree
- www/p5-HTTP-Cookies
- www/p5-HTTP-Date
The first 100 are listed.
Run dependencies 107
- archivers/brotli
- archivers/libdeflate
- archivers/liblz4
- archivers/zstd
- biology/htslib
- biology/iolib
- biology/p5-Bio-Coordinate
- biology/p5-Bio-SCF
- biology/p5-BioPerl
- converters/libiconv
- converters/p5-Encode-Locale
- converters/p5-MIME-Base32
- converters/p5-MIME-Base64
- converters/p5-Text-Iconv
- devel/gettext-runtime
- devel/libunistring
- devel/p5-Algorithm-Diff
- devel/p5-Class-Data-Inheritable
- devel/p5-Clone
- devel/p5-Data-Stag
- devel/p5-Devel-StackTrace
- devel/p5-Exception-Class
- devel/p5-Exporter-Tiny
- devel/p5-Heap
- devel/p5-IO-HTML
- devel/p5-IO-String
- devel/p5-IO-Stringy
- devel/p5-IO-Tty
- devel/p5-IPC-Run
- devel/p5-Module-Build
- devel/p5-Set-Object
- devel/p5-Set-Scalar
- devel/p5-Sub-Uplevel
- devel/p5-Test-Deep
- devel/p5-Test-Differences
- devel/p5-Test-Exception
- devel/p5-Test-Most
- devel/p5-Test-RequiresInternet
- devel/p5-Test-Warn
- devel/p5-Tie-IxHash
- devel/p5-TimeDate
- devel/readline
- dns/libidn2
- dns/libpsl
- ftp/curl
- graphics/gd
- graphics/giflib
- graphics/jbigkit
- graphics/jpeg-turbo
- graphics/lerc
- graphics/p5-GD
- graphics/p5-GD-SVG
- graphics/png
- graphics/tiff
- graphics/webp
- lang/p5-Error
- lang/p5-List-MoreUtils
- lang/p5-List-MoreUtils-XS
- lang/p5-Try-Tiny
- lang/perl5.42
- math/p5-Graph
- math/p5-Statistics-Descriptive
- net/p5-Net-HTTP
- net/p5-URI
- print/freetype2
- print/indexinfo
- security/libssh2
- security/p5-Authen-NTLM
- security/p5-Digest-HMAC
- security/p5-IO-Socket-SSL
- security/p5-Net-SSLeay
- sysutils/p5-File-Listing
- sysutils/p5-File-Which
- textproc/expat2
- textproc/libxml2
- textproc/p5-HTML-Entities-Numbered
- textproc/p5-SVG
- textproc/p5-Text-Diff
- textproc/p5-XML-DOM
- textproc/p5-XML-Filter-BufferText
- textproc/p5-XML-LibXML
- textproc/p5-XML-NamespaceSupport
- textproc/p5-XML-Parser
- textproc/p5-XML-RegExp
- textproc/p5-XML-SAX
- textproc/p5-XML-SAX-Base
- textproc/p5-XML-SAX-Writer
- textproc/p5-XML-Twig
- textproc/p5-XML-Writer
- textproc/p5-XML-XPath
- textproc/p5-XML-XPathEngine
- textproc/p5-YAML
- textproc/p5-libxml
- www/libnghttp2
- www/p5-CGI
- www/p5-HTML-Parser
- www/p5-HTML-Tagset
- www/p5-HTML-Tree
- www/p5-HTTP-Cookies
- www/p5-HTTP-Date
The first 100 are listed.
No port depends on this one.
Configuration
No options to configure.
- USES
- perl5
- Service scripts
- none
Files
pkg-plist 221
- bin/bam_coverage_windows.pl
- bin/contig_draw.pl
- bin/coverage_to_topoview.pl
- bin/feature_draw.pl
- bin/frend.pl
- bin/glyph_help.pl
- bin/render_msa.pl
- bin/search_overview.pl
- %%SITE_PERL%%/Bio/Graphics.pm
- %%SITE_PERL%%/Bio/Graphics/ConfiguratorI.pm
- %%SITE_PERL%%/Bio/Graphics/DrawTransmembrane.pm
- %%SITE_PERL%%/Bio/Graphics/Feature.pm
- %%SITE_PERL%%/Bio/Graphics/FeatureBase.pm
- %%SITE_PERL%%/Bio/Graphics/FeatureDir.pm
- %%SITE_PERL%%/Bio/Graphics/FeatureFile.pm
- %%SITE_PERL%%/Bio/Graphics/FeatureFile/Iterator.pm
- %%SITE_PERL%%/Bio/Graphics/GDWrapper.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/Factory.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/alignment.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/allele_tower.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/anchored_arrow.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/arrow.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/box.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/broken_line.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/cds.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/christmas_arrow.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/cross.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/crossbox.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/dashed_line.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/decorated_gene.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/decorated_transcript.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/diamond.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/dna.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/dot.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/dumbbell.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/ellipse.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/ex.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/extending_arrow.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/fb_shmiggle.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/fixedwidth.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/flag.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/gene.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/generic.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/graded_segments.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/group.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/hat.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/heat_map.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/heat_map_ideogram.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/heterogeneous_segments.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/hidden.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/hybrid_plot.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/ideogram.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/image.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/lightning.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/line.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/merge_parts.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/merged_alignment.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/minmax.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/operon.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/oval.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/pairplot.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/pentagram.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/phylo_align.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/pinsertion.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/point_glyph.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/primers.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/processed_transcript.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/protein.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/ragged_ends.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/rainbow_gene.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/read_pair.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/redgreen_box.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/redgreen_segment.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/repeating_shape.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/rndrect.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/ruler_arrow.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/saw_teeth.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/scale.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/segmented_keyglyph.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/segments.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/smoothing.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/so_transcript.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/span.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/spectrogram.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/splice_site.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/stackedplot.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/ternary_plot.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/text_in_box.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/three_letters.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/tic_tac_toe.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/toomany.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/topoview.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/trace.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/track.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/transcript.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/transcript2.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/translation.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/triangle.pm
- %%SITE_PERL%%/Bio/Graphics/Glyph/two_bolts.pm
The first 100 are listed.
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| Bio-Graphics-2.40.tar.gz | 1.105973e+06 | 7b20bcd9d87f3786b111ddeff2f60a51ec6712273f43547b73325dba3bebed32 |
Master sites 1
- CPAN
Commit history 0
No commits in the history this site was built from.