BSD Portsbiology/augustus 3.5.0_18 DragonFly
Genome annotation tool
- System
- DragonFly
- Repository
- DPorts
- Maintainer
- [email protected] (as in FreeBSD)
- License
- GPLv3
- Categories
- biology, science
- Package size
- 22270.3 KiB, 158468.1 KiB installed
Description
AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences.
AUGUSTUS usually belongs to the most accurate programs for the species it is trained for. Often it is the most accurate ab initio program. For example, at the independent gene finder assessment (EGASP) on the human ENCODE regions AUGUSTUS was the most accurate gene finder among the tested ab initio programs. At the more recent nGASP (worm), it was among the best in the ab initio and transcript-based categories. See accuracy statistics for further details.
In the other systems
The newest version among them is 3.5.0, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| DragonFly | biology/augustus | 3.5.0_18 newest | none known | - | [email protected] | - |
| FreeBSD | biology/augustus | 3.5.0_18 newest | none known | - | [email protected] | 2026-09-29 |
| HardenedBSD | biology/augustus | 3.5.0_18 newest | no data | - | [email protected] | - |
| GhostBSD | biology/augustus | 3.5.0_18 newest | no data | - | [email protected] | - |
Version history 1
- 3.5.0
Upstream's version as each commit to the port's Makefile set it, or as this site first saw it in the system's packages; the tree's own revisions are not versions here.
Install
Binary package:
pkg install augustus-gene-predictionFrom DPorts:
cd /usr/dports/biology/augustus && make install cleanDependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
Run dependencies 12
No port depends on this one.