BSD Portsbiology/stacks 2.68 NetBSD
Software pipeline for building loci from short-read sequences
- System
- NetBSD
- Repository
- pkgsrc
- Maintainer
- [email protected]
- License
- gnu-gpl-v2
- Categories
- biology
- Package size
- 1312.6 KiB, 7583.8 KiB installed
Description
Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.
In the other systems
| System | Port | Version |
|---|---|---|
| NetBSD | biology/stacks | 2.68 |
| FreeBSD | biology/stacks | 2.68 |
| DragonFly | biology/stacks | 2.68 |
| HardenedBSD | biology/stacks | 2.68 |
| GhostBSD | biology/stacks | 2.68 |
Install
Binary package:
pkgin install stacksFrom pkgsrc:
cd /usr/pkgsrc/biology/stacks && make install cleanPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | Version |
|---|---|
| NetBSD 10.1 x86_64 | 2.68 |
| NetBSD 10.1 aarch64 | 2.68 |
| SmartOS / illumos x86_64 | 2.68 |
| macOS 15 arm64 | - |