BSD Portswip/stacks 2.69 NetBSD
Software pipeline for building loci from short-read sequences
- System
- NetBSD
- Repository
- pkgsrc-wip
- Maintainer
- [email protected]
- License
- gnu-gpl-v2
- Categories
- wip, biology
Description
Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.
In the other systems
| System | Port | Version |
|---|---|---|
| NetBSD | wip/stacks | 2.69 |
| FreeBSD | biology/stacks | 2.68 |
| DragonFly | biology/stacks | 2.68 |
| HardenedBSD | biology/stacks | 2.68 |
| GhostBSD | biology/stacks | 2.68 |
Install
From pkgsrc-wip (no binary package):
cd /usr/pkgsrc/wip/stacks && make install cleanDependencies
Run dependencies 3
No port depends on this one.