wip/nanocomp 1.15.0.20210602 NetBSD
Compare runs of Oxford Nanopore sequencing data and alignments
- System
- NetBSD
- Repository
- pkgsrc-wip
- Maintainer
- [email protected]
- License
- gnu-gpl-v3
- Categories
- wip, biology, python
Description
Compare multiple runs of long read sequencing data and alignments. Creates violin plots or box plots of length, quality and percent identity and creates dynamic, overlaying read length histograms and a cumulative yield plot.
As of version 1.1.0 NanoComp will also create a static png image for dynamic html plots, as the latter can get quite big and slow to load for big datasets. This however requires that you install orca (https://github.com/plotly/orca). Without orca the script still works, but no static copies of dynamic plots are created.
I welcome all suggestions, bug reports, feature requests and contributions. Please leave an issue (https://github.com/wdecoster/nanocomp/issues) or open a pull request.
If you use this tool, please consider citing our publication: https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty149/4934939.
Install
From pkgsrc-wip (no binary package):
cd /usr/pkgsrc/wip/nanocomp && make install clean