wip/nanoplot 1.38.0.20210602 NetBSD

Plotting tool for long read sequencing data and alignments.

This script performs data extraction from Oxford Nanopore sequencing data in the following formats:

• fastq files (can be bgzip, bzip2 or gzip compressed)

• fastq files generated by albacore, guppy or MinKNOW containing additional information (can be bgzip, bzip2 or gzip compressed)

• sorted bam files

• sequencing_summary.txt output table generated by albacore, guppy or MinKnow basecalling (can be gzip, bz2, zip and xz compressed)

• fasta files (can be bgzip, bzip2 or gzip compressed)

Multiple files of the same type can be offered simultaneously

NanoPlot creates:

• a statistical summary
• a number of plots
• a html summary file