| biology/prodigal | FreeBSD | 2.6.3.16 | biology/prodigal 2.6.3.16: Protein-coding gene prediction for prokaryotic genomes. FreeBSD port maintained by [email protected]. |
| biology/prodigy-lig | FreeBSD | 1.1.4 | biology/prodigy-lig 1.1.4: Prediction of protein-small molecule binding affinities. FreeBSD port maintained by [email protected]. |
| biology/py-Genesis-PyAPI | FreeBSD | 1.2.1_1 | biology/py-Genesis-PyAPI 1.2.1_1: API for the Genesis platform for genetics information processing. FreeBSD port maintained by [email protected]. |
| biology/py-PySCeS | FreeBSD | 1.2.3 | biology/py-PySCeS 1.2.3: Python Simulator for Cellular Systems. FreeBSD port maintained by [email protected]. |
| biology/py-biosig | FreeBSD | 3.9.5_1 | biology/py-biosig 3.9.5_1: Library for reading and writing different biosignal data format. FreeBSD port maintained by [email protected]. |
| biology/py-bx-python | FreeBSD | 0.15.1 | biology/py-bx-python 0.15.1: Python module for reading, manipulating and writing genomic data sets. FreeBSD port maintained by [email protected]. |
| biology/py-ete3 | FreeBSD | 3.1.3_5 | biology/py-ete3 3.1.3_5: Framework for the analysis and visualization of trees. FreeBSD port maintained by [email protected]. |
| biology/py-gffutils | FreeBSD | 0.14 | biology/py-gffutils 0.14: Work with GFF and GTF files in a flexible database framework. FreeBSD port maintained by [email protected]. |
| biology/py-gtfparse | FreeBSD | 3.0.2 | biology/py-gtfparse 3.0.2: Parsing tools for GTF (gene transfer format) files. FreeBSD port maintained by [email protected]. |
| biology/py-hits | FreeBSD | 0.5.1 | biology/py-hits 0.5.1: Utilities for processing high-throughput sequencing experiments. FreeBSD port maintained by [email protected]. |
| biology/py-libnuml | FreeBSD | 1.1.8 | biology/py-libnuml 1.1.8: Numerical Markup Language for Python. FreeBSD port maintained by [email protected]. |
| biology/py-libsedml | FreeBSD | 2.0.34 | biology/py-libsedml 2.0.34: SED-ML library for Python. FreeBSD port maintained by [email protected]. |
| biology/py-loompy | FreeBSD | 3.0.8 | biology/py-loompy 3.0.8: Work with .loom files for single-cell RNA-seq data. FreeBSD port maintained by [email protected]. |
| biology/py-mrcfile | FreeBSD | 1.5.4 | biology/py-mrcfile 1.5.4: MRC file I/O library which is used in structural biology. FreeBSD port maintained by [email protected]. |
| biology/py-pandas-charm | FreeBSD | 0.3.0_3 | biology/py-pandas-charm 0.3.0_3: Library for getting character matrices into and out of pandas. FreeBSD port maintained by [email protected]. |
| biology/py-pyfaidx | FreeBSD | 0.9.1 | biology/py-pyfaidx 0.9.1: Efficient pythonic random access to fasta subsequences. FreeBSD port maintained by [email protected]. |
| biology/py-pyrodigal | FreeBSD | 3.7.1 | biology/py-pyrodigal 3.7.1: Python binding for Prodigal, an ORF finder for genomes and metagenomes. FreeBSD port maintained by [email protected]. |
| biology/py-pysam | FreeBSD | 0.24.1 | biology/py-pysam 0.24.1: Python module for reading, manipulating and writing genomic data sets. FreeBSD port maintained by [email protected]. |
| biology/py-python-libsbml | FreeBSD | 5.21.2_1 | biology/py-python-libsbml 5.21.2_1: LibSBML Python API. FreeBSD port maintained by [email protected]. |
| biology/py-resdk | FreeBSD | 22.2.3 | biology/py-resdk 22.2.3: Resolwe SDK to interact with Resolwe server and Resolwe Bioinformatics. FreeBSD port maintained by [email protected]. |
| biology/py-scikit-bio | FreeBSD | 0.7.4 | biology/py-scikit-bio 0.7.4: Data structures, algorithms, educational resources for bioinformatics. FreeBSD port maintained by [email protected]. |
| biology/py-valerius | FreeBSD | 0.2_1 | biology/py-valerius 0.2_1: Python bioinformatics tools. FreeBSD port maintained by [email protected]. |
| biology/py-xenaPython | FreeBSD | 1.0.14_1 | biology/py-xenaPython 1.0.14_1: API for Xena Hub to access genetic information shared through the hub. FreeBSD port maintained by [email protected]. |
| biology/rampler | FreeBSD | 2.1.1 | biology/rampler 2.1.1: Standalone module for sampling genomic sequences. FreeBSD port maintained by [email protected]. |
| biology/scrm | FreeBSD | 1.7.4_1 | biology/scrm 1.7.4_1: Coalescent simulator for biological sequences. FreeBSD port maintained by [email protected]. |
| biology/seqan3 | FreeBSD | 3.4.2 | biology/seqan3 3.4.2: C++ header-only library for biological sequence analysis. FreeBSD port maintained by [email protected]. |
| biology/seqkit | FreeBSD | 2.14.0_1 | biology/seqkit 2.14.0_1: Cross-platform and ultrafast toolkit for FASTA/Q file manipulation. FreeBSD port maintained by [email protected]. |
| biology/seqwish | FreeBSD | 0.7.12_1 | biology/seqwish 0.7.12_1: Alignment to variation graph inducer. FreeBSD port maintained by [email protected]. |
| biology/sigviewer | FreeBSD | 0.6.4.13_3 | biology/sigviewer 0.6.4.13_3: Viewing application for biosignals. FreeBSD port maintained by [email protected]. |
| biology/spoa | FreeBSD | 4.1.5 | biology/spoa 4.1.5: C++ implementation of the partial order alignment (POA) algorithm. FreeBSD port maintained by [email protected]. |
| biology/taxonkit | FreeBSD | 0.20.0_8 | biology/taxonkit 0.20.0_8: Practical and efficient NCBI taxonomy toolkit. FreeBSD port maintained by [email protected]. |
| biology/treekin | FreeBSD | 0.5.1_7 | biology/treekin 0.5.1_7: Efficient computation of RNA folding dynamics. FreeBSD port maintained by [email protected]. |
| biology/unikmer | FreeBSD | 0.20.0_27 | biology/unikmer 0.20.0_27: Toolkit for nucleic acid k-mer analysis, set operations on k-mers. FreeBSD port maintained by [email protected]. |
| biology/viennarna | FreeBSD | 2.7.2 | biology/viennarna 2.7.2: Alignment tools for the structural analysis of RNA. FreeBSD port maintained by [email protected]. |
| cad/adms | FreeBSD | 2.3.7 | cad/adms 2.3.7: Model generator for SPICE simulators. FreeBSD port maintained by [email protected]. |
| cad/antimony | FreeBSD | 0.9.3.20230118 | cad/antimony 0.9.3.20230118: CAD from a parallel universe. FreeBSD port maintained by [email protected]. |
| cad/apio | FreeBSD | 1.5.1,1 | cad/apio 1.5.1,1: Open source ecosystem for open FPGA boards. FreeBSD port maintained by [email protected]. |
| cad/appcsxcad | FreeBSD | 0.2.3_2 | cad/appcsxcad 0.2.3_2: Minimal GUI Application using the QCSXCAD library. FreeBSD port maintained by [email protected]. |
| cad/archimedes | FreeBSD | 2.0.1 | cad/archimedes 2.0.1: Semiconductor device simulation software. FreeBSD port maintained by [email protected]. |
| cad/caneda | FreeBSD | 0.4.0_1 | cad/caneda 0.4.0_1: EDA software suite focused on ease of use and portability. FreeBSD port maintained by [email protected]. |
| cad/cascade-compiler | FreeBSD | g20200105.1 | cad/cascade-compiler g20200105.1: Just-In-Time Compiler for Verilog from VMware Research. FreeBSD port maintained by [email protected]. |
| cad/csxcad | FreeBSD | 0.6.3_10 | cad/csxcad 0.6.3_10: C++ library to describe geometrical objects. FreeBSD port maintained by [email protected]. |
| cad/digital | FreeBSD | 0.31_3 | cad/digital 0.31_3: Digital logic designer and circuit simulator. FreeBSD port maintained by [email protected]. |
| cad/ecpprog | FreeBSD | g20200725_1 | cad/ecpprog g20200725_1: Driver for FTDI based JTAG probes, to program ECP5 FPGAs. FreeBSD port maintained by [email protected]. |
| cad/fasm | FreeBSD | g20190920_1 | cad/fasm g20190920_1: FPGA assembly (FASM) parser and generator. FreeBSD port maintained by [email protected]. |
| cad/gds3d | FreeBSD | g20220203 | cad/gds3d g20220203: Application for rendering IC (chip) layouts in 3D. FreeBSD port maintained by [email protected]. |
| cad/gdscpp | FreeBSD | g20200611 | cad/gdscpp g20200611: C++ library to create and read GDSII file. FreeBSD port maintained by [email protected]. |
| cad/gdstk | FreeBSD | 1.0.2 | cad/gdstk 1.0.2: C++ library for creation and manipulation of GDSII and OASIS files. FreeBSD port maintained by [email protected]. |
| cad/ghdl | FreeBSD | 6.0.0 | cad/ghdl 6.0.0: GNU VHDL simulator. FreeBSD port maintained by [email protected]. |
| cad/graywolf | FreeBSD | 0.1.6.4_5 | cad/graywolf 0.1.6.4_5: Fork of TimberWolf, a placement tool in VLSI design. FreeBSD port maintained by [email protected]. |
| cad/horizon-eda | FreeBSD | 2.7.2_1 | cad/horizon-eda 2.7.2_1: EDA package for printed circuit board design. FreeBSD port maintained by [email protected]. |
| cad/hs-verismith | FreeBSD | 1.1.0_2 | cad/hs-verismith 1.1.0_2: Random verilog generation and simulator testing. FreeBSD port maintained by [email protected]. |
| cad/ktechlab | FreeBSD | 0.51.0.426 | cad/ktechlab 0.51.0.426: IDE for microcontrollers and electronics. FreeBSD port maintained by [email protected]. |
| cad/ldraw | FreeBSD | 20260831,1 | cad/ldraw 20260831,1: LDraw-format CAD files representing many of LEGO bricks produced. FreeBSD port maintained by [email protected]. |
| cad/ldview | FreeBSD | 4.6_1 | cad/ldview 4.6_1: LDraw model viewer. FreeBSD port maintained by [email protected]. |
| cad/leocad | FreeBSD | 26.09 | cad/leocad 26.09: CAD program for creating virtual LEGO models. FreeBSD port maintained by [email protected]. |
| cad/libgdsii | FreeBSD | 0.21 | cad/libgdsii 0.21: C++ library and command-line utility for reading GDSII geometry files. FreeBSD port maintained by [email protected]. |
| cad/librepcb | FreeBSD | 2.1.1_4 | cad/librepcb 2.1.1_4: Schematic and PCB editing software. FreeBSD port maintained by [email protected]. |
| cad/magic | FreeBSD | 8.3.684 | cad/magic 8.3.684: Interactive editor for VLSI layouts. FreeBSD port maintained by [email protected]. |
| cad/netgen-lvs | FreeBSD | 1.5.325 | cad/netgen-lvs 1.5.325: Tool for comparing netlists (a process known as LVS). FreeBSD port maintained by [email protected]. |
| cad/nvc | FreeBSD | 1.23.0 | cad/nvc 1.23.0: VHDL compiler and simulator. FreeBSD port maintained by [email protected]. |
| cad/openfpgaloader | FreeBSD | 1.1.1 | cad/openfpgaloader 1.1.1: Universal utility for programming FPGA. FreeBSD port maintained by [email protected]. |
| cad/openroad | FreeBSD | 26.q4,1 | cad/openroad 26.q4,1: ASIC physical design tool. FreeBSD port maintained by [email protected]. |
| cad/opentimer | FreeBSD | 2.1.0.20250707 | cad/opentimer 2.1.0.20250707: High-performance timing analysis tool for VLSI systems. FreeBSD port maintained by [email protected]. |
| cad/oregano | FreeBSD | 0.84.43_7 | cad/oregano 0.84.43_7: Schematic capture and circuit simulator. FreeBSD port maintained by [email protected]. |
| cad/padring | FreeBSD | g20210731 | cad/padring g20210731: Padring generator for ASICs. FreeBSD port maintained by [email protected]. |
| cad/py-amaranth | FreeBSD | 0.5.10 | cad/py-amaranth 0.5.10: Amaranth hardware definition language. FreeBSD port maintained by [email protected]. |
| cad/py-cocotb | FreeBSD | 2.1.0 | cad/py-cocotb 2.1.0: Coroutine based cosimulation library for writing VHDL and Verilog. FreeBSD port maintained by [email protected]. |
| cad/py-csxcad | FreeBSD | 0.6.3_1 | cad/py-csxcad 0.6.3_1: Python binding for csxcad, C++ library to describe geometrical objects. FreeBSD port maintained by [email protected]. |
| cad/py-edalize | FreeBSD | 0.6.8 | cad/py-edalize 0.6.8: Library for interfacing EDA tools. FreeBSD port maintained by [email protected]. |
| cad/py-gdstk | FreeBSD | 1.0.2 | cad/py-gdstk 1.0.2: Library for creation and manipulation of GDSII and OASIS files. FreeBSD port maintained by [email protected]. |
| cad/py-gmsh | FreeBSD | 5.0.0.g_1 | cad/py-gmsh 5.0.0.g_1: Automatic 3D finite element mesh generator (gmsh's own binding). FreeBSD port maintained by [email protected]. |
| cad/py-pyfda | FreeBSD | 0.9.5 | cad/py-pyfda 0.9.5: GUI tool for designing and analysing discrete time filters. FreeBSD port maintained by [email protected]. |
| cad/py-pygmsh | FreeBSD | 7.1.17_5 | cad/py-pygmsh 7.1.17_5: Python frontend for Gmsh (on top of Gmsh's own binding). FreeBSD port maintained by [email protected]. |
| cad/py-pymtl | FreeBSD | 3.1.17 | cad/py-pymtl 3.1.17: Python-based hardware generation, simulation, verification framework. FreeBSD port maintained by [email protected]. |
| cad/py-pyvcd | FreeBSD | 0.5.1 | cad/py-pyvcd 0.5.1: Python VCD file support. FreeBSD port maintained by [email protected]. |
| cad/py-vunit-hdl | FreeBSD | 4.7.1 | cad/py-vunit-hdl 4.7.1: Open source unit testing framework for VHDL/SystemVerilog. FreeBSD port maintained by [email protected]. |
| cad/qcsxcad | FreeBSD | 0.6.3_2 | cad/qcsxcad 0.6.3_2: Qt-GUI for CSXCAD. FreeBSD port maintained by [email protected]. |
| cad/qflow | FreeBSD | 1.4.104_3 | cad/qflow 1.4.104_3: End-to-end digital synthesis flow for ASIC designs. FreeBSD port maintained by [email protected]. |
| cad/qrouter | FreeBSD | 1.4.90 | cad/qrouter 1.4.90: Tool to generate metal layers and vias. FreeBSD port maintained by [email protected]. |
| cad/qucs-s | FreeBSD | 26.1.1 | cad/qucs-s 26.1.1: Quite Universal Circuit Simulator: GUI for circuit simulation kernels. FreeBSD port maintained by [email protected]. |
| cad/qucsator | FreeBSD | 0.0.20.4 | cad/qucsator 0.0.20.4: Circuit simulator of the Qucs project. FreeBSD port maintained by [email protected]. |
| cad/silice | FreeBSD | g20260322_1 | cad/silice g20260322_1: Language that simplifies prototyping and writing algorithms for FPGAs. FreeBSD port maintained by [email protected]. |
| cad/stm32flash | FreeBSD | 0.7 | cad/stm32flash 0.7: Flash program for STM32 using the ST serial bootloader. FreeBSD port maintained by [email protected]. |
| cad/surelog | FreeBSD | 1.87 | cad/surelog 1.87: SystemVerilog 2017 Pre-processor, Parser, Elaborator, etc. FreeBSD port maintained by [email protected]. |
| cad/svlint | FreeBSD | 0.9.5_9 | cad/svlint 0.9.5_9: SystemVerilog linter. FreeBSD port maintained by [email protected]. |
| cad/svls | FreeBSD | 0.2.14_10 | cad/svls 0.2.14_10: SystemVerilog language server. FreeBSD port maintained by [email protected]. |
| cad/symbiyosys | FreeBSD | 0.69 | cad/symbiyosys 0.69: SymbiYosys (sby): Front-end for Yosys-based formal verification flows. FreeBSD port maintained by [email protected]. |
| cad/uhdm | FreeBSD | 1.87 | cad/uhdm 1.87: Universal Hardware Data Model. FreeBSD port maintained by [email protected]. |
| cad/verilator | FreeBSD | 5.052 | cad/verilator 5.052: Synthesizable Verilog to C++ compiler. FreeBSD port maintained by [email protected]. |
| cad/veroroute | FreeBSD | 2.40,1 | cad/veroroute 2.40,1: PCB (printed circuit board) design software. FreeBSD port maintained by [email protected]. |
| cad/veryl | FreeBSD | 0.22.0_1 | cad/veryl 0.22.0_1: Veryl: A modern Hardware Description Language (HDL). FreeBSD port maintained by [email protected]. |
| cad/xyce | FreeBSD | 7.10.0_2 | cad/xyce 7.10.0_2: Xyce electronic simulator. FreeBSD port maintained by [email protected]. |
| cad/yosys | FreeBSD | 0.69_1 | cad/yosys 0.69_1: Yosys Open SYnthesis Suite. FreeBSD port maintained by [email protected]. |
| chinese/chinese-calendar | FreeBSD | 1.0.3.r59 | chinese/chinese-calendar 1.0.3.r59: Chinese traditional calendar. FreeBSD port maintained by [email protected]. |
| chinese/opencc-cli | FreeBSD | 1.3.1 | chinese/opencc-cli 1.3.1: Open Chinese Convert CLI - Node.js binding with command line interface. FreeBSD port maintained by [email protected]. |
| chinese/py-OpenCC | FreeBSD | 1.4.2 | chinese/py-OpenCC 1.4.2: Conversion between Traditional and Simplified Chinese. FreeBSD port maintained by [email protected]. |
| chinese/py-chinese-calendar | FreeBSD | 1.11.0 | chinese/py-chinese-calendar 1.11.0: Check if some day is holiday in China. FreeBSD port maintained by [email protected]. |
| chinese/py-rjieba | FreeBSD | 0.2.1_5 | chinese/py-rjieba 0.2.1_5: Chinese words segmentation utilities. FreeBSD port maintained by [email protected]. |
| comms/airspy | FreeBSD | 1.0.10 | comms/airspy 1.0.10: AirSpy's usemode driver and associated tools. FreeBSD port maintained by [email protected]. |
BSD Ports