| biology/py-multiqc | FreeBSD | 1.35 | biology/py-multiqc 1.35: Aggregate bioinformatics analysis reports across samples and tools. FreeBSD port maintained by [email protected]. |
| biology/py-ont-fast5-api | FreeBSD | 4.1.3 | biology/py-ont-fast5-api 4.1.3: Interface to HDF5 files in Oxford Nanopore .fast5 format. FreeBSD port maintained by [email protected]. |
| biology/py-py2bit | FreeBSD | 1.0.1 | biology/py-py2bit 1.0.1: Python interface for 2bit packed nucleotide files. FreeBSD port maintained by [email protected]. |
| biology/py-pybigwig | FreeBSD | 0.3.22_1 | biology/py-pybigwig 0.3.22_1: Python access to bigWig files using libBigWig. FreeBSD port maintained by [email protected]. |
| biology/py-pydeseq2 | FreeBSD | 0.5.4 | biology/py-pydeseq2 0.5.4: Python implementation of the popular DESeq2 R package. FreeBSD port maintained by [email protected]. |
| biology/py-pywgsim | FreeBSD | 0.6.0 | biology/py-pywgsim 0.6.0: Modified wgsim genomic data simulator. FreeBSD port maintained by [email protected]. |
| biology/rainbow | FreeBSD | 2.0.4 | biology/rainbow 2.0.4: Efficient clustering and assembling of short reads, especially for RAD. FreeBSD port maintained by [email protected]. |
| biology/readseq | FreeBSD | 2.1.19_2 | biology/readseq 2.1.19_2: Read and reformat biosequences, Java command-line version. FreeBSD port maintained by [email protected]. |
| biology/rna-seq | FreeBSD | 0.2.0 | biology/rna-seq 0.2.0: Metaport for RNA-Seq analysis. FreeBSD port maintained by [email protected]. |
| biology/salmon | FreeBSD | 1.10.3_2 | biology/salmon 1.10.3_2: Transcript-level quantification of RNA-seq from lightweight alignments. FreeBSD port maintained by [email protected]. |
| biology/sam2pairwise | FreeBSD | 1.0.0 | biology/sam2pairwise 1.0.0: Show pairwise alignment for each read in a SAM file. FreeBSD port maintained by [email protected]. |
| biology/samtools | FreeBSD | 1.24 | biology/samtools 1.24: Tools for manipulating next-generation sequencing data. FreeBSD port maintained by [email protected]. |
| biology/seaview | FreeBSD | 5.1,1 | biology/seaview 5.1,1: Multiple DNA/protein sequence alignment editor. FreeBSD port maintained by [email protected]. |
| biology/seqtk | FreeBSD | 1.5 | biology/seqtk 1.5: Tool for processing sequences in FASTA/FASTQ format. FreeBSD port maintained by [email protected]. |
| biology/slclust | FreeBSD | 2010.02.02 | biology/slclust 2010.02.02: Single-linkage clustering with Jaccard similarity. FreeBSD port maintained by [email protected]. |
| biology/smithwaterman | FreeBSD | g20160702 | biology/smithwaterman g20160702: Smith-waterman-gotoh alignment algorithm. FreeBSD port maintained by [email protected]. |
| biology/sra-tools | FreeBSD | 3.4.1_3 | biology/sra-tools 3.4.1_3: NCBI's toolkit for handling data in INSDC Sequence Read Archives. FreeBSD port maintained by [email protected]. |
| biology/stacks | FreeBSD | 2.68 | biology/stacks 2.68: Software pipeline for building loci from short-read sequences. FreeBSD port maintained by [email protected]. |
| biology/star | FreeBSD | 2.7.11.a_1 | biology/star 2.7.11.a_1: Spliced Transcripts Alignment to a Reference. FreeBSD port maintained by [email protected]. |
| biology/subread | FreeBSD | 2.1.1 | biology/subread 2.1.1: High-performance read alignment, quantification and mutation discovery. FreeBSD port maintained by [email protected]. |
| biology/tabixpp | FreeBSD | 1.1.2 | biology/tabixpp 1.1.2: C++ wrapper to tabix indexer. FreeBSD port maintained by [email protected]. |
| biology/trimadap | FreeBSD | 0.1.4 | biology/trimadap 0.1.4: Trim adapter sequences from Illumina data using heuristic rules. FreeBSD port maintained by [email protected]. |
| biology/trimmomatic | FreeBSD | 0.39_2 | biology/trimmomatic 0.39_2: Flexible read trimming tool for Illumina NGS data. FreeBSD port maintained by [email protected]. |
| biology/ucsc-userapps | FreeBSD | 502 | biology/ucsc-userapps 502: Command line tools from the UCSC Genome Browser project. FreeBSD port maintained by [email protected]. |
| biology/vcflib | FreeBSD | 1.0.15 | biology/vcflib 1.0.15: C++ library and CLI tools for parsing and manipulating VCF files. FreeBSD port maintained by [email protected]. |
| biology/vcftools | FreeBSD | 0.1.17 | biology/vcftools 0.1.17: Tools for working with VCF genomics files. FreeBSD port maintained by [email protected]. |
| biology/vsearch | FreeBSD | 2.32.0 | biology/vsearch 2.32.0: Versatile open-source tool for metagenomics. FreeBSD port maintained by [email protected]. |
| biology/vt | FreeBSD | 0.57721_3 | biology/vt 0.57721_3: Discovers short variants from Next Generation Sequencing data. FreeBSD port maintained by [email protected]. |
| biology/wfa2-lib | FreeBSD | 2.3.6 | biology/wfa2-lib 2.3.6: Exact gap-affine algorithm using homology to accelerate alignment. FreeBSD port maintained by [email protected]. |
| biology/wise | FreeBSD | 2.4.1_1 | biology/wise 2.4.1_1: Intelligent algorithms for DNA searches. FreeBSD port maintained by [email protected]. |
| cad/admesh | FreeBSD | 0.98.5_1 | cad/admesh 0.98.5_1: Program for processing STL triangulated solid meshes. FreeBSD port maintained by [email protected]. |
| cad/alliance | FreeBSD | 5.1.1_7 | cad/alliance 5.1.1_7: Complete set of CAD tools and libraries for VLSI design. FreeBSD port maintained by [email protected]. |
| cad/atlc | FreeBSD | 4.6.1_1 | cad/atlc 4.6.1_1: Tool to calculate the impedance of transmission lines. FreeBSD port maintained by [email protected]. |
| cad/brlcad | FreeBSD | 7.32.6_1 | cad/brlcad 7.32.6_1: CSG modelling system from the US Ballistic Research Laboratory. FreeBSD port maintained by [email protected]. |
| cad/chipvault | FreeBSD | 200607 | cad/chipvault 200607: Project organizer for VHDL and Verilog RTL hardware designs. FreeBSD port maintained by [email protected]. |
| cad/dinotrace | FreeBSD | 9.4f_11 | cad/dinotrace 9.4f_11: Graphical signal trace waveform viewer. FreeBSD port maintained by [email protected]. |
| cad/electric | FreeBSD | 7.0.0_5 | cad/electric 7.0.0_5: Sophisticated electrical CAD system. FreeBSD port maintained by [email protected]. |
| cad/feappv | FreeBSD | 5.1.2.e | cad/feappv 5.1.2.e: Finite element analysis program (personal version). FreeBSD port maintained by [email protected]. |
| cad/freehdl | FreeBSD | 0.0.8_1 | cad/freehdl 0.0.8_1: Free VHDL simulator. FreeBSD port maintained by [email protected]. |
| cad/gnucap | FreeBSD | 2013.04.23 | cad/gnucap 2013.04.23: GNU Circuit Analysis Package. FreeBSD port maintained by [email protected]. |
| cad/gplcver | FreeBSD | 2.12.a | cad/gplcver 2.12.a: Verilog HDL simulator. FreeBSD port maintained by [email protected]. |
| cad/ifcopenshell | FreeBSD | 0.7.0.231127_7 | cad/ifcopenshell 0.7.0.231127_7: Open source IFC library and geometry engine. FreeBSD port maintained by [email protected]. |
| cad/meshdev | FreeBSD | 0.5_1 | cad/meshdev 0.5_1: Mesh comparison software. FreeBSD port maintained by [email protected]. |
| cad/opencascade740 | FreeBSD | 7.4.0_5 | cad/opencascade740 7.4.0_5: Open CASCADE Technology, 3D modeling & numerical simulation. FreeBSD port maintained by [email protected]. |
| cad/pdnmesh | FreeBSD | 0.2.2_24 | cad/pdnmesh 0.2.2_24: Mesh generator and solver for Finite Element problems. FreeBSD port maintained by [email protected]. |
| cad/qmls | FreeBSD | 0.2 | cad/qmls 0.2: Quine-McCluskey Logic Simplifier. FreeBSD port maintained by [email protected]. |
| cad/tochnog | FreeBSD | 20140100_15 | cad/tochnog 20140100_15: Free explicit/implicit Finite Element Program. FreeBSD port maintained by [email protected]. |
| cad/verilog-mode.el | FreeBSD | 801_25 | cad/verilog-mode.el 801_25: Emacs lisp modules for the Verilog language. FreeBSD port maintained by [email protected]. |
| cad/z88 | FreeBSD | 15_2 | cad/z88 15_2: Compact Finite Element Analysis System. FreeBSD port maintained by [email protected]. |
| chinese/CJKUnifonts | FreeBSD | 0.2.20080216.1_4 | chinese/CJKUnifonts 0.2.20080216.1_4: CJKUnifonts TrueType Font is a combine of Arphic Ming and Kai fonts. FreeBSD port maintained by [email protected]. |
| chinese/arphicttf | FreeBSD | 2.11_6 | chinese/arphicttf 2.11_6: Four Chinese Big5/GB TrueType fonts made by Arphic Technology. FreeBSD port maintained by [email protected]. |
| chinese/auto-cn-l10n | FreeBSD | 1.1_4 | chinese/auto-cn-l10n 1.1_4: The automatic localization for Simplified Chinese zh_CN.eucCN locale. FreeBSD port maintained by [email protected]. |
| chinese/auto-tw-l10n | FreeBSD | 1.16 | chinese/auto-tw-l10n 1.16: Automatic localization for Traditional Chinese locale. FreeBSD port maintained by [email protected]. |
| chinese/autoconvert | FreeBSD | 0.3.16_5 | chinese/autoconvert 0.3.16_5: Intelligent Chinese encoding converter. FreeBSD port maintained by [email protected]. |
| chinese/big5width | FreeBSD | 1.0 | chinese/big5width 1.0: Unicode width dirty fix for Big5 font (zh_TW.UTF-8 locale). FreeBSD port maintained by [email protected]. |
| chinese/c2t | FreeBSD | 1.0_1 | chinese/c2t 1.0_1: Translates GB/Big5 encoding to tone pinyin. FreeBSD port maintained by [email protected]. |
| chinese/cless | FreeBSD | 290_1 | chinese/cless 290_1: Better pager utility (and it speaks Chinese). FreeBSD port maintained by [email protected]. |
| chinese/dictd-database | FreeBSD | 1.6_1 | chinese/dictd-database 1.6_1: Chinese <-> English dictd words database. FreeBSD port maintained by [email protected]. |
| chinese/enscript | FreeBSD | 1.6.6_4 | chinese/enscript 1.6.6_4: ASCII to PostScript filter. FreeBSD port maintained by [email protected]. |
| chinese/fandol | FreeBSD | 0.3_1 | chinese/fandol 0.3_1: CTAN Fandol: Four GNU GPLv3-licensed Chinese OpenType fonts. FreeBSD port maintained by [email protected]. |
| chinese/fireflyttf | FreeBSD | 1.3.0_8 | chinese/fireflyttf 1.3.0_8: Combination of two Arphic Sung fonts. FreeBSD port maintained by [email protected]. |
| chinese/font-std | FreeBSD | 0.0.20090602 | chinese/font-std 0.0.20090602: Chinese Standard Fonts. FreeBSD port maintained by [email protected]. |
| chinese/gb2jis | FreeBSD | 1.5_1 | chinese/gb2jis 1.5_1: Convert GuoBiao Hanzi to JIS Kanji. FreeBSD port maintained by [email protected]. |
| chinese/gb2ps | FreeBSD | 2.02 | chinese/gb2ps 2.02: Converts Chinese GB (simple) encoded text to PostScript. FreeBSD port maintained by [email protected]. |
| chinese/hc | FreeBSD | 3.0_1 | chinese/hc 3.0_1: Hanzi Converter -- converts between GB and BIG-5 codes. FreeBSD port maintained by [email protected]. |
| chinese/ibus-table-chinese | FreeBSD | 1.8.14 | chinese/ibus-table-chinese 1.8.14: Chinese input tables for IBus. FreeBSD port maintained by [email protected]. |
| chinese/jis2gb | FreeBSD | 1.5_1 | chinese/jis2gb 1.5_1: Convert JIS Kanji to GuoBiao Hanzi. FreeBSD port maintained by [email protected]. |
| chinese/libtabe | FreeBSD | 0.2.6_8 | chinese/libtabe 0.2.6_8: Unified library for Chinese text processing. FreeBSD port maintained by [email protected]. |
| chinese/linux-wps-office-zh_CN | FreeBSD | 11.1.0.10161_1 | chinese/linux-wps-office-zh_CN 11.1.0.10161_1: Complete office suite with PDF editor. FreeBSD port maintained by [email protected]. |
| chinese/lunar | FreeBSD | 2.1_2 | chinese/lunar 2.1_2: Convert between Gregorian Solar Calendar (SC) and Lunar Calendar (LC). FreeBSD port maintained by [email protected]. |
| chinese/moettf | FreeBSD | 2.0_7 | chinese/moettf 2.0_7: Three Chinese BIG5 TrueType fonts: Kai LiShu Sung SungExt. FreeBSD port maintained by [email protected]. |
| chinese/opendesktop-fonts | FreeBSD | 1.4.2_6 | chinese/opendesktop-fonts 1.4.2_6: Ming and Kai face of OpenDesktop fonts. FreeBSD port maintained by [email protected]. |
| chinese/oto | FreeBSD | 0.5_1 | chinese/oto 0.5_1: Show you font info and add new 'name' and 'cmap' tables. FreeBSD port maintained by [email protected]. |
| chinese/pcmanx | FreeBSD | 1.3_4 | chinese/pcmanx 1.3_4: BBS client using GTK 2.x. FreeBSD port maintained by [email protected]. |
| chinese/phpbb3-tw | FreeBSD | 3.0.12 | chinese/phpbb3-tw 3.0.12: The Traditional Chinese version of phpBB3. FreeBSD port maintained by [email protected]. |
| chinese/qe | FreeBSD | 0.1.1_3 | chinese/qe 0.1.1_3: PE2-like editor program for Unix. FreeBSD port maintained by [email protected]. |
| chinese/scim-fcitx | FreeBSD | 3.1.1_9 | chinese/scim-fcitx 3.1.1_9: SCIM IMEngine module for fcitx. FreeBSD port maintained by [email protected]. |
| chinese/scim-pinyin | FreeBSD | 0.5.92_4 | chinese/scim-pinyin 0.5.92_4: SCIM Chinese Smart Pinyin input method. FreeBSD port maintained by [email protected]. |
| chinese/scim-tables | FreeBSD | 0.5.10_1 | chinese/scim-tables 0.5.10_1: SCIM table based Chinese input methods. FreeBSD port maintained by [email protected]. |
| chinese/ttf2pt1 | FreeBSD | 3.4.0 | chinese/ttf2pt1 3.4.0: True Type Font to Postscript Type 1 converter with Chinese maps. FreeBSD port maintained by [email protected]. |
| chinese/ttfm | FreeBSD | 0.9.5_8 | chinese/ttfm 0.9.5_8: Big5/GB enhanced TrueType Font Manager. FreeBSD port maintained by [email protected]. |
| chinese/wenju | FreeBSD | 1.6_4 | chinese/wenju 1.6_4: Collection of writing tools in Chinese. FreeBSD port maintained by [email protected]. |
| comms/airspyhf | FreeBSD | 1.6.8.7_1 | comms/airspyhf 1.6.8.7_1: User mode driver for Airspy HF+ SDR. FreeBSD port maintained by [email protected]. |
| comms/atslog | FreeBSD | 2.1.1_10 | comms/atslog 2.1.1_10: Software for collecting and analyzing calls from different PBX models. FreeBSD port maintained by [email protected]. |
| comms/bforce-kst | FreeBSD | 0.22.8.7_3 | comms/bforce-kst 0.22.8.7_3: Simple ifcico like Fidonet technology mailer. FreeBSD port maintained by [email protected]. |
| comms/bpl+ | FreeBSD | 1.0_1 | comms/bpl+ 1.0_1: B Plus file transfer protocol. FreeBSD port maintained by [email protected]. |
| comms/ems-flasher | FreeBSD | 0.03_11 | comms/ems-flasher 0.03_11: Utility to flash ROM images to the EMS USB 64mb flash cart. FreeBSD port maintained by [email protected]. |
| comms/gkermit | FreeBSD | 1.0_2 | comms/gkermit 1.0_2: File transfer utility using the kermit protocol. FreeBSD port maintained by [email protected]. |
| comms/gnocky | FreeBSD | 0.0.7_7 | comms/gnocky 0.0.7_7: Graphical (GTK 2) frontend for gnokii. FreeBSD port maintained by [email protected]. |
| comms/hcidump | FreeBSD | 1.5.1_1 | comms/hcidump 1.5.1_1: Bluetooth traffic dumper, similar to tcpdump. FreeBSD port maintained by [email protected]. |
| comms/libirman | FreeBSD | 0.5.2 | comms/libirman 0.5.2: Library for Evation's Irman infrared receiver. FreeBSD port maintained by [email protected]. |
| comms/lirc | FreeBSD | 0.9.0_14,1 | comms/lirc 0.9.0_14,1: Linux Infrared Remote Control. FreeBSD port maintained by [email protected]. |
| comms/opencbm | FreeBSD | 0.4.99.104_2 | comms/opencbm 0.4.99.104_2: Commodore CBM serial IEC/IEEE-488 bus utilities. FreeBSD port maintained by [email protected]. |
| comms/opencbm-kmod | FreeBSD | 0.4.99.104.1405500_2 | comms/opencbm-kmod 0.4.99.104.1405500_2: OpenCBM driver module for parallel-port X[MA]-1541 cables. FreeBSD port maintained by [email protected]. |
| comms/opencbm-plugin-xa1541 | FreeBSD | 0.4.99.104_2 | comms/opencbm-plugin-xa1541 0.4.99.104_2: OpenCBM plugin for parallel-port cables. FreeBSD port maintained by [email protected]. |
| comms/sredird | FreeBSD | 2.2.2_1 | comms/sredird 2.2.2_1: RFC 2217 compliant serial port redirector. FreeBSD port maintained by [email protected]. |
| comms/tits | FreeBSD | 1.3.0_1 | comms/tits 1.3.0_1: Server which provides telnet(1) access to one or more tty ports. FreeBSD port maintained by [email protected]. |
| comms/tkscanfax | FreeBSD | 1.1.8_2,1 | comms/tkscanfax 1.1.8_2,1: Tcl/Tk frontend for fax scan/receive/send program (command is tkfax). FreeBSD port maintained by [email protected]. |
| comms/uird | FreeBSD | 1.1 | comms/uird 1.1: The Universal IR Receiver Daemon. FreeBSD port maintained by [email protected]. |
| comms/viewfax | FreeBSD | 2.6_2 | comms/viewfax 2.6_2: Display files containing g3 and/or g4 coded fax pages. FreeBSD port maintained by [email protected]. |
BSD Ports