| audio/xsynth-dssi | FreeBSD | 0.9.4_7 | audio/xsynth-dssi 0.9.4_7: Classic analog style software synthesizer. FreeBSD port maintained by [email protected]. |
| audio/zynaddsubfx | FreeBSD | 3.0.6_3,2 | audio/zynaddsubfx 3.0.6_3,2: Realtime software synthesizer. FreeBSD port maintained by [email protected]. |
| benchmarks/autobench | FreeBSD | 2.1.2_11 | benchmarks/autobench 2.1.2_11: Automating the process of benchmarking a web server. FreeBSD port maintained by [email protected]. |
| benchmarks/bonnie | FreeBSD | 2.0.6_2 | benchmarks/bonnie 2.0.6_2: Performance Test of Filesystem I/O. FreeBSD port maintained by [email protected]. |
| benchmarks/dbench | FreeBSD | 4.0_3 | benchmarks/dbench 4.0_3: Simulation of the Ziff-Davis netbench benchmark. FreeBSD port maintained by [email protected]. |
| benchmarks/dkftpbench | FreeBSD | 0.45_2 | benchmarks/dkftpbench 0.45_2: FTP benchmark program. FreeBSD port maintained by [email protected]. |
| benchmarks/fhourstones | FreeBSD | 3.1_2 | benchmarks/fhourstones 3.1_2: Integrated benchmark program. FreeBSD port maintained by [email protected]. |
| benchmarks/flamegraph | FreeBSD | 1.1 | benchmarks/flamegraph 1.1: Stack trace visualizer. FreeBSD port maintained by [email protected]. |
| benchmarks/flowgrind | FreeBSD | 0.8.2_5 | benchmarks/flowgrind 0.8.2_5: Measure throughput and other metrics for TCP. FreeBSD port maintained by [email protected]. |
| benchmarks/forkbomb | FreeBSD | 1.4_2 | benchmarks/forkbomb 1.4_2: System stress testing tool. FreeBSD port maintained by [email protected]. |
| benchmarks/gtkperf | FreeBSD | 0.40_11 | benchmarks/gtkperf 0.40_11: Measure your system's GTK performance. FreeBSD port maintained by [email protected]. |
| benchmarks/himenobench | FreeBSD | 2015.07.09_10 | benchmarks/himenobench 2015.07.09_10: Tool for measuring performance of floating point operations. FreeBSD port maintained by [email protected]. |
| benchmarks/httperf | FreeBSD | 0.9.1_1 | benchmarks/httperf 0.9.1_1: Tool for measuring web server performance. FreeBSD port maintained by [email protected]. |
| benchmarks/libmicro | FreeBSD | 0.4.1 | benchmarks/libmicro 0.4.1: Set of utilities to benchmark productivity of system calls. FreeBSD port maintained by [email protected]. |
| benchmarks/mdtest | FreeBSD | 1.9.3_17 | benchmarks/mdtest 1.9.3_17: Filesystem metadata benchmark utility. FreeBSD port maintained by [email protected]. |
| benchmarks/netio | FreeBSD | 1.33 | benchmarks/netio 1.33: Network benchmark. FreeBSD port maintained by [email protected]. |
| benchmarks/nosqlbench | FreeBSD | 0.0.20151214_2 | benchmarks/nosqlbench 0.0.20151214_2: Micro-benchmarking NoSQL storage. FreeBSD port maintained by [email protected]. |
| benchmarks/pathload | FreeBSD | 1.3.2 | benchmarks/pathload 1.3.2: Measurement tool for network path available bandwidth estimation. FreeBSD port maintained by [email protected]. |
| benchmarks/pathrate | FreeBSD | 2.4.1 | benchmarks/pathrate 2.4.1: Measurement tool for capacity estimation of network paths. FreeBSD port maintained by [email protected]. |
| benchmarks/perftest | FreeBSD | 4.5.0.17 | benchmarks/perftest 4.5.0.17: Collection of tests for RDMA micro-benchmark. FreeBSD port maintained by [email protected]. |
| benchmarks/pipebench | FreeBSD | 0.40_1 | benchmarks/pipebench 0.40_1: Pipebench shows current throughput/amount of data through a pipe. FreeBSD port maintained by [email protected]. |
| benchmarks/polygraph | FreeBSD | 4.13.0_6 | benchmarks/polygraph 4.13.0_6: Benchmarking tool for Web proxies. FreeBSD port maintained by [email protected]. |
| benchmarks/postal | FreeBSD | 0.76_1 | benchmarks/postal 0.76_1: Benchmark SMTP/POP servers. FreeBSD port maintained by [email protected]. |
| benchmarks/postmark | FreeBSD | 1.53_1 | benchmarks/postmark 1.53_1: NetApps file system benchmark. FreeBSD port maintained by [email protected]. |
| benchmarks/slowloris | FreeBSD | 0.7_2 | benchmarks/slowloris 0.7_2: Low-bandwidth, yet greedy and poisonous HTTP client. FreeBSD port maintained by [email protected]. |
| benchmarks/smhasher | FreeBSD | 1.0_2 | benchmarks/smhasher 1.0_2: Hash Algorithm Benchmarking. FreeBSD port maintained by [email protected]. |
| benchmarks/stream | FreeBSD | 5.10 | benchmarks/stream 5.10: Synthetic benchmark program that measures sustainable memory bandwidth. FreeBSD port maintained by [email protected]. |
| benchmarks/tcpblast | FreeBSD | 1.1_1 | benchmarks/tcpblast 1.1_1: Measures the throughput of a TCP connection. FreeBSD port maintained by [email protected]. |
| benchmarks/tsung | FreeBSD | 1.8.0_1 | benchmarks/tsung 1.8.0_1: Multi-protocol distributed load testing tool. FreeBSD port maintained by [email protected]. |
| benchmarks/ubench | FreeBSD | 0.32_1 | benchmarks/ubench 0.32_1: Unix Benchmark Utility for CPU(s) and memory. FreeBSD port maintained by [email protected]. |
| benchmarks/webbench | FreeBSD | 1.5_1 | benchmarks/webbench 1.5_1: Simple forking web benchmark. FreeBSD port maintained by [email protected]. |
| biology/atac-seq | FreeBSD | 0.3.1 | biology/atac-seq 0.3.1: Metaport for ATAC-Seq analysis. FreeBSD port maintained by [email protected]. |
| biology/avida | FreeBSD | 2.12.4_1 | biology/avida 2.12.4_1: Auto-adaptive genetic system designed for ALife research. FreeBSD port maintained by [email protected]. |
| biology/babel | FreeBSD | 1.6_4 | biology/babel 1.6_4: Converts among various molecular file formats. FreeBSD port maintained by [email protected]. |
| biology/bamtools | FreeBSD | 2.5.3 | biology/bamtools 2.5.3: API and toolkit for handling BAM files. FreeBSD port maintained by [email protected]. |
| biology/bamutil | FreeBSD | 1.0.15 | biology/bamutil 1.0.15: Utilities for working with SAM/BAM files. FreeBSD port maintained by [email protected]. |
| biology/bbmap | FreeBSD | 40.02 | biology/bbmap 40.02: BBMap short read aligner, and other bioinformatic tools. FreeBSD port maintained by [email protected]. |
| biology/bcf-score | FreeBSD | 1.20_3 | biology/bcf-score 1.20_3: Bcftools plugins for GWAS-VCF summary statistics files. FreeBSD port maintained by [email protected]. |
| biology/bcftools | FreeBSD | 1.24 | biology/bcftools 1.24: Tools for manipulating next-generation sequencing data. FreeBSD port maintained by [email protected]. |
| biology/bedtools | FreeBSD | 2.31.1 | biology/bedtools 2.31.1: Toolset for genome set arithmetic such as intersect, union. FreeBSD port maintained by [email protected]. |
| biology/bfc | FreeBSD | g20150417 | biology/bfc g20150417: Correct sequencing errors from Illumina sequencing data. FreeBSD port maintained by [email protected]. |
| biology/bifrost | FreeBSD | 1.3.9 | biology/bifrost 1.3.9: Parallel construction, indexing and querying of de Bruijn graphs. FreeBSD port maintained by [email protected]. |
| biology/bio-mocha | FreeBSD | 1.22 | biology/bio-mocha 1.22: Bcftools plugin for mosaic chromosomal alteration analysis. FreeBSD port maintained by [email protected]. |
| biology/bioawk | FreeBSD | 1.0.7 | biology/bioawk 1.0.7: BWK awk modified for biological data. FreeBSD port maintained by [email protected]. |
| biology/biococoa | FreeBSD | 2.2.2_9 | biology/biococoa 2.2.2_9: Bioinformatics framework. FreeBSD port maintained by [email protected]. |
| biology/biostar-tools | FreeBSD | 2.1 | biology/biostar-tools 2.1: Meta-port for Biostar Handbook tools. FreeBSD port maintained by [email protected]. |
| biology/bolt-lmm | FreeBSD | 2.5_1 | biology/bolt-lmm 2.5_1: Mixed model association testing and variance component analysis. FreeBSD port maintained by [email protected]. |
| biology/bowtie | FreeBSD | 1.3.1 | biology/bowtie 1.3.1: Ultrafast, memory-efficient short read aligner. FreeBSD port maintained by [email protected]. |
| biology/bowtie2 | FreeBSD | 2.5.5 | biology/bowtie2 2.5.5: Ultrafast, memory-efficient short read aligner. FreeBSD port maintained by [email protected]. |
| biology/canu | FreeBSD | 2.3 | biology/canu 2.3: Single molecule sequence assembler. FreeBSD port maintained by [email protected]. |
| biology/cd-hit | FreeBSD | 4.8.1_3 | biology/cd-hit 4.8.1_3: Clustering and comparing protein or nucleotide sequences. FreeBSD port maintained by [email protected]. |
| biology/cdbfasta | FreeBSD | 2023.07.10 | biology/cdbfasta 2023.07.10: Fast indexing and retrieval of FASTA records from flat file databases. FreeBSD port maintained by [email protected]. |
| biology/chip-seq | FreeBSD | 0.3.1 | biology/chip-seq 0.3.1: Metaport for ChIP-Seq analysis. FreeBSD port maintained by [email protected]. |
| biology/clustalw | FreeBSD | 2.1_3 | biology/clustalw 2.1_3: Multiple alignment program for DNA or proteins. FreeBSD port maintained by [email protected]. |
| biology/erminej | FreeBSD | 3.2_2 | biology/erminej 3.2_2: Analyses of gene sets such as gene expression profiling studies. FreeBSD port maintained by [email protected]. |
| biology/fasta | FreeBSD | 21.1.1_1 | biology/fasta 21.1.1_1: Collection of programs for searching DNA and protein databases. FreeBSD port maintained by [email protected]. |
| biology/fastahack | FreeBSD | 1.0.0 | biology/fastahack 1.0.0: Utility for indexing and sequence extraction from FASTA files. FreeBSD port maintained by [email protected]. |
| biology/fastdnaml | FreeBSD | 1.2.2_2 | biology/fastdnaml 1.2.2_2: Faster DNAML, makes phylogenetic trees using maximum likelihood. FreeBSD port maintained by [email protected]. |
| biology/fastool | FreeBSD | 0.1.4 | biology/fastool 0.1.4: Simple and quick FastQ and FastA tool for file reading and conversion. FreeBSD port maintained by [email protected]. |
| biology/fastqc | FreeBSD | 0.12.1_2 | biology/fastqc 0.12.1_2: Quality control tool for high throughput sequence data. FreeBSD port maintained by [email protected]. |
| biology/fasttree | FreeBSD | 2.1.11 | biology/fasttree 2.1.11: Approximately-maximum-likelihood phylogenetic trees from alignments. FreeBSD port maintained by [email protected]. |
| biology/fastx-toolkit | FreeBSD | 0.0.14_1 | biology/fastx-toolkit 0.0.14_1: CLI tools for Short-Reads FASTA/FASTQ files preprocessing. FreeBSD port maintained by [email protected]. |
| biology/flash | FreeBSD | 1.2.11 | biology/flash 1.2.11: Fast Length Adjustment of SHort reads. FreeBSD port maintained by [email protected]. |
| biology/fluctuate | FreeBSD | 1.40 | biology/fluctuate 1.40: Program to fit population models. FreeBSD port maintained by [email protected]. |
| biology/freebayes | FreeBSD | 1.3.10 | biology/freebayes 1.3.10: Bayesian haplotype-based polymorphism discovery and genotyping. FreeBSD port maintained by [email protected]. |
| biology/garlic | FreeBSD | 1.6_1 | biology/garlic 1.6_1: Molecular viewer, editor, and visualization program. FreeBSD port maintained by [email protected]. |
| biology/gcta | FreeBSD | 1.94.1_6 | biology/gcta 1.94.1_6: Genome-wide Complex Trait Analysis. FreeBSD port maintained by [email protected]. |
| biology/gemma | FreeBSD | 0.98.5_3 | biology/gemma 0.98.5_3: Genome-wide Efficient Mixed Model Association. FreeBSD port maintained by [email protected]. |
| biology/gff2ps | FreeBSD | 0.98l | biology/gff2ps 0.98l: Convert gff-formatted genomic data sets to PostScript. FreeBSD port maintained by [email protected]. |
| biology/gffread | FreeBSD | 0.12.9 | biology/gffread 0.12.9: GFF/GTF format conversions, filtering, FASTA extraction, etc. FreeBSD port maintained by [email protected]. |
| biology/gmap | FreeBSD | 2025.07.31_1 | biology/gmap 2025.07.31_1: Genomic Mapping and Alignment Program for mRNA and EST Sequences. FreeBSD port maintained by [email protected]. |
| biology/haplohseq | FreeBSD | 0.1.2.3_4 | biology/haplohseq 0.1.2.3_4: Identify regions of allelic imbalance. FreeBSD port maintained by [email protected]. |
| biology/hisat2 | FreeBSD | 2.2.3 | biology/hisat2 2.2.3: Alignment program for mapping next-generation sequencing reads. FreeBSD port maintained by [email protected]. |
| biology/htslib | FreeBSD | 1.24_1 | biology/htslib 1.24_1: C library for high-throughput sequencing data formats. FreeBSD port maintained by [email protected]. |
| biology/jellyfish | FreeBSD | 2.3.1 | biology/jellyfish 2.3.1: Fast, memory-efficient counting of k-mers in DNA. FreeBSD port maintained by [email protected]. |
| biology/kallisto | FreeBSD | 0.52.0,1 | biology/kallisto 0.52.0,1: Quantify abundances of transcripts from RNA-Seq data. FreeBSD port maintained by [email protected]. |
| biology/libgff | FreeBSD | 2.0.1 | biology/libgff 2.0.1: GFF/GTF parsing library based on GCLib. FreeBSD port maintained by [email protected]. |
| biology/libgtextutils | FreeBSD | 0.7 | biology/libgtextutils 0.7: Gordon's text utilities. FreeBSD port maintained by [email protected]. |
| biology/mca-calling | FreeBSD | 0.1.0 | biology/mca-calling 0.1.0: Core tools for Mosaic Chromosomal Alteration event calling. FreeBSD port maintained by [email protected]. |
| biology/megahit | FreeBSD | 1.2.9.22 | biology/megahit 1.2.9.22: Ultra-fast single-node large and complex metagenomics assembly. FreeBSD port maintained by [email protected]. |
| biology/minimap2 | FreeBSD | 2.31 | biology/minimap2 2.31: Pairwise aligner for genomic and spliced nucleotide sequences. FreeBSD port maintained by [email protected]. |
| biology/mmseqs2 | FreeBSD | 17.b804.f | biology/mmseqs2 17.b804.f: Ultra fast and sensitive sequence search and clustering suite. FreeBSD port maintained by [email protected]. |
| biology/ncbi-blast+ | FreeBSD | 2.17.0_2 | biology/ncbi-blast+ 2.17.0_2: NCBI implementation of Basic Local Alignment Search Tool. FreeBSD port maintained by [email protected]. |
| biology/ncbi-entrez-direct | FreeBSD | 14.9.20210423_48 | biology/ncbi-entrez-direct 14.9.20210423_48: Access to the NCBI's suite of interconnected databases. FreeBSD port maintained by [email protected]. |
| biology/p5-transdecoder | FreeBSD | 6.0.0 | biology/p5-transdecoder 6.0.0: Identify candidate coding regions within transcript sequences. FreeBSD port maintained by [email protected]. |
| biology/pbbam | FreeBSD | 0.18.0_14 | biology/pbbam 0.18.0_14: PacBio BAM C++ library, with SWIG bindings. FreeBSD port maintained by [email protected]. |
| biology/pear-merger | FreeBSD | 0.9.6_1 | biology/pear-merger 0.9.6_1: Memory-efficient and highly accurate paired-end read merger. FreeBSD port maintained by [email protected]. |
| biology/phyml | FreeBSD | 3.3.20220408_1,1 | biology/phyml 3.3.20220408_1,1: Simple, fast, and accurate algorithm to estimate large phylogenies. FreeBSD port maintained by [email protected]. |
| biology/picard-tools | FreeBSD | 3.5.0 | biology/picard-tools 3.5.0: CLI tools for manipulating high-throughput sequencing (HTS) data. FreeBSD port maintained by [email protected]. |
| biology/preseq | FreeBSD | 3.2.0 | biology/preseq 3.2.0: Predict yield of distinct reads from a genomic library. FreeBSD port maintained by [email protected]. |
| biology/primer3 | FreeBSD | 2.3.6 | biology/primer3 2.3.6: Primer3 helps to choose primers for PCR reactions. FreeBSD port maintained by [email protected]. |
| biology/protomol | FreeBSD | 2.0.3_16 | biology/protomol 2.0.3_16: OO, component based, framework for molecular dynamics (MD) simulations. FreeBSD port maintained by [email protected]. |
| biology/psi88 | FreeBSD | 1.0_17 | biology/psi88 1.0_17: Plotting wavefunctions (molecular orbitals) in 3D. FreeBSD port maintained by [email protected]. |
| biology/py-bcbio-gff | FreeBSD | 0.7.1_1 | biology/py-bcbio-gff 0.7.1_1: Read and write Generic Feature Format (GFF) with Biopython integration. FreeBSD port maintained by [email protected]. |
| biology/py-crossmap | FreeBSD | 0.7.4 | biology/py-crossmap 0.7.4: Lift over genomics coordinates between assemblies. FreeBSD port maintained by [email protected]. |
| biology/py-deeptools | FreeBSD | 3.5.6 | biology/py-deeptools 3.5.6: User-friendly tools for exploring deep-sequencing data. FreeBSD port maintained by [email protected]. |
| biology/py-deeptoolsintervals | FreeBSD | 0.1.9_1 | biology/py-deeptoolsintervals 0.1.9_1: Python interface for deepTools interval trees. FreeBSD port maintained by [email protected]. |
| biology/py-dna-features-viewer | FreeBSD | 3.1.5 | biology/py-dna-features-viewer 3.1.5: Python library to visualize DNA features, e.g. GenBank or Gff files. FreeBSD port maintained by [email protected]. |
| biology/py-goatools | FreeBSD | 1.6.5 | biology/py-goatools 1.6.5: Tools for processing and visualizing Gene Ontology terms. FreeBSD port maintained by [email protected]. |
| biology/py-macs3 | FreeBSD | 3.0.5 | biology/py-macs3 3.0.5: Peak caller aimed at transcription factor binding sites. FreeBSD port maintained by [email protected]. |
BSD Ports