| biology/py-gffutils | DragonFly | 0.13_1 | biology/py-gffutils 0.13_1: Work with GFF and GTF files in a flexible database framework. DragonFly port maintained by [email protected]. |
| biology/py-goatools | DragonFly | 1.1.6_2 | biology/py-goatools 1.1.6_2: Tools for processing and visualizing Gene Ontology terms. DragonFly port maintained by [email protected]. |
| biology/py-gtfparse | DragonFly | 1.3.0_1 | biology/py-gtfparse 1.3.0_1: Parsing tools for GTF (gene transfer format) files. DragonFly port maintained by [email protected]. |
| biology/py-hits | DragonFly | 0.1_1 | biology/py-hits 0.1_1: Utilities for processing high-throughput sequencing experiments. DragonFly port maintained by [email protected]. |
| biology/py-htseq | DragonFly | 2.0.9_1 | biology/py-htseq 2.0.9_1: Python library to facilitate programmatic analysis of sequence data. DragonFly port maintained by [email protected]. |
| biology/py-libnuml | DragonFly | 1.1.7 | biology/py-libnuml 1.1.7: Numerical Markup Language for Python. DragonFly port maintained by [email protected]. |
| biology/py-libsedml | DragonFly | 2.0.32 | biology/py-libsedml 2.0.32: SED-ML library for Python. DragonFly port maintained by [email protected]. |
| biology/py-macs2 | DragonFly | 2.2.9.1_1 | biology/py-macs2 2.2.9.1_1: Identify transcription factor binding sites. DragonFly port maintained by [email protected]. |
| biology/py-macs3 | DragonFly | 3.0.3 | biology/py-macs3 3.0.3: Peak caller aimed at transcription factor binding sites. DragonFly port maintained by [email protected]. |
| biology/py-mrcfile | DragonFly | 1.5.3_1 | biology/py-mrcfile 1.5.3_1: MRC file I/O library which is used in structural biology. DragonFly port maintained by [email protected]. |
| biology/py-newick | DragonFly | 1.10.0 | biology/py-newick 1.10.0: Python module to read and write the Newick format. DragonFly port maintained by [email protected]. |
| biology/py-ont-fast5-api | DragonFly | 4.0.2_1 | biology/py-ont-fast5-api 4.0.2_1: Interface to HDF5 files in Oxford Nanopore .fast5 format. DragonFly port maintained by [email protected]. |
| biology/py-orange3-bioinformatics | DragonFly | 4.8.4_1 | biology/py-orange3-bioinformatics 4.8.4_1: Orange add-on providing common functionality for bioinformatics. DragonFly port maintained by [email protected]. |
| biology/py-pandas-charm | DragonFly | 0.3.0_3 | biology/py-pandas-charm 0.3.0_3: Library for getting character matrices into and out of pandas. DragonFly port maintained by [email protected]. |
| biology/py-py2bit | DragonFly | 0.3.0_1 | biology/py-py2bit 0.3.0_1: Python interface for 2bit packed nucleotide files. DragonFly port maintained by [email protected]. |
| biology/py-pybigwig | DragonFly | 0.3.22_1 | biology/py-pybigwig 0.3.22_1: Python access to bigWig files using libBigWig. DragonFly port maintained by [email protected]. |
| biology/py-pyfaidx | DragonFly | 0.5.9.5_1 | biology/py-pyfaidx 0.5.9.5_1: Efficient pythonic random access to fasta subsequences. DragonFly port maintained by [email protected]. |
| biology/py-pyrodigal | DragonFly | 3.6.3 | biology/py-pyrodigal 3.6.3: Python binding for Prodigal, an ORF finder for genomes and metagenomes. DragonFly port maintained by [email protected]. |
| biology/py-pysam | DragonFly | 0.23.0_1 | biology/py-pysam 0.23.0_1: Python module for reading, manipulating and writing genomic data sets. DragonFly port maintained by [email protected]. |
| biology/py-python-libsbml | DragonFly | 5.20.4_1 | biology/py-python-libsbml 5.20.4_1: LibSBML Python API. DragonFly port maintained by [email protected]. |
| biology/py-pywgsim | DragonFly | 0.5.2_2 | biology/py-pywgsim 0.5.2_2: Modified wgsim genomic data simulator. DragonFly port maintained by [email protected]. |
| biology/py-resdk | DragonFly | 21.2.1 | biology/py-resdk 21.2.1: Resolwe SDK to interact with Resolwe server and Resolwe Bioinformatics. DragonFly port maintained by [email protected]. |
| biology/py-scikit-bio | DragonFly | 0.6.1 | biology/py-scikit-bio 0.6.1: Data structures, algorithms, educational resources for bioinformatics. DragonFly port maintained by [email protected]. |
| biology/py-valerius | DragonFly | 0.2_1 | biology/py-valerius 0.2_1: Python bioinformatics tools. DragonFly port maintained by [email protected]. |
| biology/py-xenaPython | DragonFly | 1.0.14_1 | biology/py-xenaPython 1.0.14_1: API for Xena Hub to access genetic information shared through the hub. DragonFly port maintained by [email protected]. |
| biology/pyfasta | DragonFly | 0.5.2_6 | biology/pyfasta 0.5.2_6: Fast, memory-efficient, pythonic access to fasta sequence files. DragonFly port maintained by [email protected]. |
| biology/python-nexus | DragonFly | 2.9.0_1 | biology/python-nexus 2.9.0_1: Generic nexus file format reader for python. DragonFly port maintained by [email protected]. |
| biology/rainbow | DragonFly | 2.0.4 | biology/rainbow 2.0.4: Efficient clustering and assembling of short reads, especially for RAD. DragonFly port maintained by [email protected]. |
| biology/rampler | DragonFly | 2.0.0_1 | biology/rampler 2.0.0_1: Standalone module for sampling genomic sequences. DragonFly port maintained by [email protected]. |
| biology/readseq | DragonFly | 2.1.19 | biology/readseq 2.1.19: Read and reformat biosequences, Java command-line version. DragonFly port maintained by [email protected]. |
| biology/ruby-bio | DragonFly | 1.5.1 | biology/ruby-bio 1.5.1: Integrated environment for Bioinformatics written in Ruby. DragonFly port maintained by [email protected]. |
| biology/rubygem-bio | DragonFly | 2.0.6 | biology/rubygem-bio 2.0.6: Integrated environment for Bioinformatics written in Ruby. DragonFly port maintained by [email protected]. |
| biology/rubygem-bio-executables | DragonFly | 1.0.0 | biology/rubygem-bio-executables 1.0.0: Collection of miscellaneous utilities for bioinformatics. DragonFly port maintained by [email protected]. |
| biology/rubygem-bio-old-biofetch-emulator | DragonFly | 1.0.0 | biology/rubygem-bio-old-biofetch-emulator 1.0.0: Emulate Bio::Fetch object. DragonFly port maintained by [email protected]. |
| biology/rubygem-bio-shell | DragonFly | 1.0.1 | biology/rubygem-bio-shell 1.0.1: Command-line interface on BioRuby. DragonFly port maintained by [email protected]. |
| biology/sam2pairwise | DragonFly | 1.0.0 | biology/sam2pairwise 1.0.0: Show pairwise alignment for each read in a SAM file. DragonFly port maintained by [email protected]. |
| biology/samtools | DragonFly | 1.21 | biology/samtools 1.21: Tools for manipulating next-generation sequencing data. DragonFly port maintained by [email protected]. |
| biology/scrm | DragonFly | 1.7.4_1 | biology/scrm 1.7.4_1: Coalescent simulator for biological sequences. DragonFly port maintained by [email protected]. |
| biology/seaview | DragonFly | 5.1,1 | biology/seaview 5.1,1: Multiple DNA/protein sequence alignment editor. DragonFly port maintained by [email protected]. |
| biology/seqan | DragonFly | 2.4.0 | biology/seqan 2.4.0: C++ sequence analysis template library. DragonFly port maintained by h2+[email protected]. |
| biology/seqan-apps | DragonFly | 2.4.0_11 | biology/seqan-apps 2.4.0_11: Official bioinformatic applications based on the SeqAn library. DragonFly port maintained by h2+[email protected]. |
| biology/seqan1 | DragonFly | 1.3.1_4 | biology/seqan1 1.3.1_4: C++ Sequence Analysis Library. DragonFly port maintained by h2+[email protected]. |
| biology/seqkit | DragonFly | 2.10.0 | biology/seqkit 2.10.0: Cross-platform and ultrafast toolkit for FASTA/Q file manipulation. DragonFly port maintained by [email protected]. |
| biology/seqtk | DragonFly | 1.4 | biology/seqtk 1.4: Tool for processing sequences in FASTA/FASTQ format. DragonFly port maintained by [email protected]. |
| biology/sigviewer | DragonFly | 0.6.4.13_2 | biology/sigviewer 0.6.4.13_2: Viewing application for biosignals. DragonFly port maintained by [email protected]. |
| biology/slclust | DragonFly | 2010.02.02 | biology/slclust 2010.02.02: Single-linkage clustering with Jaccard similarity. DragonFly port maintained by [email protected]. |
| biology/smithwaterman | DragonFly | g20160702 | biology/smithwaterman g20160702: Smith-waterman-gotoh alignment algorithm. DragonFly port maintained by [email protected]. |
| biology/snpeff | DragonFly | 5.1 | biology/snpeff 5.1: Genetic variant annotation and effect prediction toolbox. DragonFly port maintained by [email protected]. |
| biology/spoa | DragonFly | 4.1.0 | biology/spoa 4.1.0: C++ implementation of the partial order alignment (POA) algorithm. DragonFly port maintained by [email protected]. |
| biology/sra-tools | DragonFly | 2.11.0_4 | biology/sra-tools 2.11.0_4: NCBI's toolkit for handling data in INSDC Sequence Read Archives. DragonFly port maintained by [email protected]. |
| biology/stacks | DragonFly | 2.68 | biology/stacks 2.68: Software pipeline for building loci from short-read sequences. DragonFly port maintained by [email protected]. |
| biology/star | DragonFly | 2.7.9.a | biology/star 2.7.9.a: Spliced Transcripts Alignment to a Reference. DragonFly port maintained by [email protected]. |
| biology/stringtie | DragonFly | 2.1.1 | biology/stringtie 2.1.1: Transcript assembly and quantification for RNA-seq. DragonFly port maintained by [email protected]. |
| biology/subread | DragonFly | 2.1.0 | biology/subread 2.1.0: High-performance read alignment, quantification and mutation discovery. DragonFly port maintained by [email protected]. |
| biology/tRNAscan-SE | DragonFly | 2.0.11 | biology/tRNAscan-SE 2.0.11: Searching for tRNA genes in genomic sequence. DragonFly port maintained by [email protected]. |
| biology/tabixpp | DragonFly | 1.1.2 | biology/tabixpp 1.1.2: C++ wrapper to tabix indexer. DragonFly port maintained by [email protected]. |
| biology/taxonkit | DragonFly | 0.19.0 | biology/taxonkit 0.19.0: Practical and efficient NCBI taxonomy toolkit. DragonFly port maintained by [email protected]. |
| biology/treekin | DragonFly | 0.5.1_7 | biology/treekin 0.5.1_7: Efficient computation of RNA folding dynamics. DragonFly port maintained by [email protected]. |
| biology/treepuzzle | DragonFly | 5.2 | biology/treepuzzle 5.2: Maximum likelihood phylogeny reconstruction using quartets. DragonFly port maintained by [email protected]. |
| biology/trimadap | DragonFly | 0.1.4 | biology/trimadap 0.1.4: Trim adapter sequences from Illumina data using heuristic rules. DragonFly port maintained by [email protected]. |
| biology/trimmomatic | DragonFly | 0.39 | biology/trimmomatic 0.39: Flexible read trimming tool for Illumina NGS data. DragonFly port maintained by [email protected]. |
| biology/ugene | DragonFly | 40.1_1 | biology/ugene 40.1_1: Integrated bioinformatics toolkit. DragonFly port maintained by h2+[email protected]. |
| biology/unikmer | DragonFly | 0.20.0_4 | biology/unikmer 0.20.0_4: Toolkit for nucleic acid k-mer analysis, set operations on k-mers. DragonFly port maintained by [email protected]. |
| biology/vcf-split | DragonFly | 0.1.5.10_1 | biology/vcf-split 0.1.5.10_1: Split a multi-sample VCF into single-sample VCFs. DragonFly port maintained by [email protected]. |
| biology/vcf2hap | DragonFly | 0.1.6.7_1 | biology/vcf2hap 0.1.6.7_1: Generate .hap file from VCF for haplohseq. DragonFly port maintained by [email protected]. |
| biology/vcftools | DragonFly | 0.1.16_2 | biology/vcftools 0.1.16_2: Tools for working with VCF genomics files. DragonFly port maintained by [email protected]. |
| biology/velvet | DragonFly | 1.2.10_2 | biology/velvet 1.2.10_2: Sequence assembler for very short reads. DragonFly port maintained by [email protected]. |
| biology/viennarna | DragonFly | 2.7.0_1 | biology/viennarna 2.7.0_1: Alignment tools for the structural analysis of RNA. DragonFly port maintained by [email protected]. |
| biology/vt | DragonFly | 0.57721_3 | biology/vt 0.57721_3: Discovers short variants from Next Generation Sequencing data. DragonFly port maintained by [email protected]. |
| biology/wfa2-lib | DragonFly | 2.3.5 | biology/wfa2-lib 2.3.5: Exact gap-affine algorithm using homology to accelerate alignment. DragonFly port maintained by [email protected]. |
| biology/wise | DragonFly | 2.4.1_1 | biology/wise 2.4.1_1: Intelligent algorithms for DNA searches. DragonFly port maintained by [email protected]. |
| cad/abc | DragonFly | g20241117 | cad/abc g20241117: System for sequential synthesis and verification. DragonFly port maintained by [email protected]. |
| cad/admesh | DragonFly | 0.98.5_1 | cad/admesh 0.98.5_1: Program for processing STL triangulated solid meshes. DragonFly port maintained by [email protected]. |
| cad/adms | DragonFly | 2.3.7 | cad/adms 2.3.7: Model generator for SPICE simulators. DragonFly port maintained by [email protected]. |
| cad/alliance | DragonFly | 5.1.1_6 | cad/alliance 5.1.1_6: Complete set of CAD tools and libraries for VLSI design. DragonFly port maintained by [email protected]. |
| cad/antimony | DragonFly | 0.9.3.20230118 | cad/antimony 0.9.3.20230118: CAD from a parallel universe. DragonFly port maintained by [email protected]. |
| cad/apio | DragonFly | 0.9.5 | cad/apio 0.9.5: Open source ecosystem for open FPGA boards. DragonFly port maintained by [email protected]. |
| cad/appcsxcad | DragonFly | 0.2.3 | cad/appcsxcad 0.2.3: Minimal GUI Application using the QCSXCAD library. DragonFly port maintained by [email protected]. |
| cad/astk-client | DragonFly | 2020.0.1_2 | cad/astk-client 2020.0.1_2: Graphical interface for Code_Aster (client side). DragonFly port maintained by [email protected]. |
| cad/astk-serveur | DragonFly | 2020.0.1_2 | cad/astk-serveur 2020.0.1_2: Graphical interface for Code_Aster (server side). DragonFly port maintained by [email protected]. |
| cad/atlc | DragonFly | 4.6.1_1 | cad/atlc 4.6.1_1: Tool to calculate the impedance of transmission lines. DragonFly port maintained by [email protected]. |
| cad/calculix | DragonFly | 2.22 | cad/calculix 2.22: Three-Dimensional Structural Finite Element Program. DragonFly port maintained by [email protected]. |
| cad/calculix-ccx | DragonFly | 2.22_1 | cad/calculix-ccx 2.22_1: Three-Dimensional Structural Finite Element Program. DragonFly port maintained by [email protected]. |
| cad/cascade | DragonFly | 1.4_1 | cad/cascade 1.4_1: Simple tool to analyze noise and distortion of a RF system. DragonFly port maintained by [email protected]. |
| cad/cascade-compiler | DragonFly | g20200105.1 | cad/cascade-compiler g20200105.1: Just-In-Time Compiler for Verilog from VMware Research. DragonFly port maintained by [email protected]. |
| cad/chipvault | DragonFly | 200607 | cad/chipvault 200607: Project organizer for VHDL and Verilog RTL hardware designs. DragonFly port maintained by [email protected]. |
| cad/csxcad | DragonFly | 0.6.3_4 | cad/csxcad 0.6.3_4: C++ library to describe geometrical objects. DragonFly port maintained by [email protected]. |
| cad/digital | DragonFly | 0.31 | cad/digital 0.31: Digital logic designer and circuit simulator. DragonFly port maintained by [email protected]. |
| cad/dinotrace | DragonFly | 9.4f_10 | cad/dinotrace 9.4f_10: Graphical signal trace waveform viewer. DragonFly port maintained by [email protected]. |
| cad/ecpprog | DragonFly | g20200725_1 | cad/ecpprog g20200725_1: Driver for FTDI based JTAG probes, to program ECP5 FPGAs. DragonFly port maintained by [email protected]. |
| cad/electric | DragonFly | 7.0.0_5 | cad/electric 7.0.0_5: Sophisticated electrical CAD system. DragonFly port maintained by [email protected]. |
| cad/fasm | DragonFly | g20190920_1 | cad/fasm g20190920_1: FPGA assembly (FASM) parser and generator. DragonFly port maintained by [email protected]. |
| cad/fdm_materials | DragonFly | 5.7.0,1 | cad/fdm_materials 5.7.0,1: FDM Material database for 3D printers. DragonFly port maintained by [email protected]. |
| cad/feappv | DragonFly | 5.1.2.e | cad/feappv 5.1.2.e: Finite element analysis program (personal version). DragonFly port maintained by [email protected]. |
| cad/fidocadj | DragonFly | 0.24.8 | cad/fidocadj 0.24.8: Easy to use graphical editor for electronics. DragonFly port maintained by [email protected]. |
| cad/freehdl | DragonFly | 0.0.8_1 | cad/freehdl 0.0.8_1: Free VHDL simulator. DragonFly port maintained by [email protected]. |
| cad/fritzing | DragonFly | 0.9.2_21 | cad/fritzing 0.9.2_21: CAD for printed circuit boards. DragonFly port maintained by [email protected]. |
| cad/gds3d | DragonFly | g20220203 | cad/gds3d g20220203: Application for rendering IC (chip) layouts in 3D. DragonFly port maintained by [email protected]. |
| cad/gdscpp | DragonFly | g20200611 | cad/gdscpp g20200611: C++ library to create and read GDSII file. DragonFly port maintained by [email protected]. |
| cad/gdsreader | DragonFly | 0.3.2_2 | cad/gdsreader 0.3.2_2: GDS2 stream file to Postscript and HP/GL converter. DragonFly port maintained by [email protected]. |
BSD Ports