| wip/fasda | NetBSD | 0.2.0.1 | wip/fasda 0.2.0.1: Fast and simple differential analysis. NetBSD port maintained by [email protected]. |
| wip/fasda-utils | NetBSD | 0.1.0.5 | wip/fasda-utils 0.1.0.5: Fast and simple differential analysis extras. NetBSD port maintained by [email protected]. |
| wip/fastahack | NetBSD | 0.0.0.20160702 | wip/fastahack 0.0.0.20160702: Utilities for indexing and sequence extraction from FASTA files. NetBSD port maintained by [email protected]. |
| wip/fastaunique | NetBSD | 2016.02.08 | wip/fastaunique 2016.02.08: Sort and uniq fasta files. NetBSD port maintained by [email protected]. |
| wip/fastool | NetBSD | 0.1.4 | wip/fastool 0.1.4: Simple and quick FastQ and FastA tool for file reading and conversion. NetBSD port maintained by [email protected]. |
| wip/fastp | NetBSD | 1.0.1 | wip/fastp 1.0.1: Ultra-fast all-in-one FASTQ preprocessor. NetBSD port maintained by [email protected]. |
| wip/fastq-trim | NetBSD | 0.1.4 | wip/fastq-trim 0.1.4: Lightening fast sequence read trimmer. NetBSD port maintained by [email protected]. |
| wip/fastqc | NetBSD | 0.11.9nb2 | wip/fastqc 0.11.9nb2: Quality control tool for high throughput sequence data. NetBSD port maintained by [email protected]. |
| wip/fasttree | NetBSD | 2.1.11 | wip/fasttree 2.1.11: Approximately-maximum-likelihood phylogenetic trees from alignments. NetBSD port maintained by [email protected]. |
| wip/fastx-toolkit | NetBSD | 0.0.14.6nb1 | wip/fastx-toolkit 0.0.14.6nb1: CLI tools for Short-Reads FASTA/FASTQ files preprocessing. NetBSD port maintained by [email protected]. |
| wip/fbsd2pkg | NetBSD | 0.6.0.10 | wip/fbsd2pkg 0.6.0.10: Convert a FreeBSD port framework to a pkgsrc package. NetBSD port maintained by [email protected]. |
| wip/filevercmp | NetBSD | 0.0.0.20151117 | wip/filevercmp 0.0.0.20151117: Filevercmp function as in sort --version-sort. NetBSD port maintained by [email protected]. |
| wip/gcta | NetBSD | 1.94.1 | wip/gcta 1.94.1: Genome-wide Complex Trait Analysis. NetBSD port maintained by [email protected]. |
| wip/gemma | NetBSD | 0.98.5 | wip/gemma 0.98.5: Genome-wide Efficient Mixed Model Association. NetBSD port maintained by [email protected]. |
| wip/generand | NetBSD | 0.1.2.9 | wip/generand 0.1.2.9: Generate random genomic data in FASTA/FASTQ, SAM, or VCF format. NetBSD port maintained by [email protected]. |
| wip/gffread | NetBSD | 0.12.7 | wip/gffread 0.12.7: GFF/GTF format conversions, filtering, FASTA extraction, etc. NetBSD port maintained by [email protected]. |
| wip/gmap | NetBSD | 2014.07.04 | wip/gmap 2014.07.04: Genomic Mapping and Alignment Program for mRNA and EST Sequences. NetBSD port maintained by [email protected]. |
| wip/haplohseq | NetBSD | 0.1.2.5 | wip/haplohseq 0.1.2.5: Identify regions of allelic imbalance. NetBSD port maintained by [email protected]. |
| wip/hisat2 | NetBSD | 2.2.1nb2 | wip/hisat2 2.2.1nb2: Alignment program for mapping next-generation sequencing reads. NetBSD port maintained by [email protected]. |
| wip/htslib | NetBSD | 1.22 | wip/htslib 1.22: C library for high-throughput sequencing data formats. NetBSD port maintained by [email protected]. |
| wip/igv | NetBSD | | wip/igv : Visualization tool for genomic datasets. NetBSD port maintained by [email protected]. |
| wip/kallisto | NetBSD | 0.51.1nb1 | wip/kallisto 0.51.1nb1: Quantify abundances of transcripts from RNA-Seq data. NetBSD port maintained by [email protected]. |
| wip/libgtextutils | NetBSD | 0.7.2 | wip/libgtextutils 0.7.2: Gordon text utilities. NetBSD port maintained by [email protected]. |
| wip/libpare | NetBSD | 1.1.1.12 | wip/libpare 1.1.1.12: Pointer Array Regular Expressions. NetBSD port maintained by [email protected]. |
| wip/libsysinfo | NetBSD | 0.0.3 | wip/libsysinfo 0.0.3: GNU libc's sysinfo port for \${OPSYS}. NetBSD port maintained by [email protected]. |
| wip/libxtend | NetBSD | 0.2.1.16 | wip/libxtend 0.2.1.16: Miscellaneous functions to extend libc. NetBSD port maintained by [email protected]. |
| wip/lpjs | NetBSD | 0.0.6.73 | wip/lpjs 0.0.6.73: Lightweight, Portable Job Scheduler. NetBSD port maintained by [email protected]. |
| wip/metal | NetBSD | 2011.03.25 | wip/metal 2011.03.25: Meta-analysis of genomewide association scans. NetBSD port maintained by [email protected]. |
| wip/microsynteny-tools | NetBSD | 0.1.0.175 | wip/microsynteny-tools 0.1.0.175: Tools for exploring microsyntenic differences among species. NetBSD port maintained by [email protected]. |
| wip/mst-bench | NetBSD | 0.2.2 | wip/mst-bench 0.2.2: Maximum sustainable throughput benchmark. NetBSD port maintained by [email protected]. |
| wip/munge | NetBSD | 0.5.16 | wip/munge 0.5.16: Authentication service for creating and validating credentials. NetBSD port maintained by [email protected]. |
| wip/muscle | NetBSD | 3.8.31 | wip/muscle 3.8.31: MUltiple Sequence Comparison by Log-Expectation. NetBSD port maintained by [email protected]. |
| wip/ncbi-blast+ | NetBSD | src | wip/ncbi-blast+ src: NCBI implementation of Basic Local Alignment Search Tool. NetBSD port maintained by [email protected]. |
| wip/npmount | NetBSD | 0.1.1.3 | wip/npmount 0.1.1.3: Command line tool for non-privileged [un]mount. NetBSD port maintained by [email protected]. |
| wip/p5-transdecoder | NetBSD | 5.3.0 | wip/p5-transdecoder 5.3.0: Identify candidate coding regions within transcript sequences. NetBSD port maintained by [email protected]. |
| wip/papp | NetBSD | 0.0.0.14 | wip/papp 0.0.0.14: Assembly Preprocessor. NetBSD port maintained by [email protected]. |
| wip/peak-classifier | NetBSD | 0.1.4.21 | wip/peak-classifier 0.1.4.21: Classify ChIP/ATAC-Seq peaks based on features provided in a GFF. NetBSD port maintained by [email protected]. |
| wip/pear | NetBSD | 0.9.6 | wip/pear 0.9.6: Memory-efficient and highly accurate pair-end read merger. NetBSD port maintained by [email protected]. |
| wip/pkg-dev | NetBSD | 0.3.0.39 | wip/pkg-dev 0.3.0.39: Scripts to automate common tasks in pkgsrc development. NetBSD port maintained by [email protected]. |
| wip/plasm | NetBSD | 0.0.0.68 | wip/plasm 0.0.0.68: Portable Assembler. NetBSD port maintained by [email protected]. |
| wip/preseq | NetBSD | 3.2.0 | wip/preseq 3.2.0: Predict yield of distinct reads from a genomic library. NetBSD port maintained by [email protected]. |
| wip/py-cython-legacy | NetBSD | 0.29.36 | wip/py-cython-legacy 0.29.36: C-Extensions for Python. NetBSD port maintained by [email protected]. |
| wip/py-dna-features-viewer | NetBSD | 3.1.3 | wip/py-dna-features-viewer 3.1.3: Python library to visualize DNA features, e.g. GenBank or Gff files. NetBSD port maintained by [email protected]. |
| wip/py-dnaio | NetBSD | 1.2.0 | wip/py-dnaio 1.2.0: Read and write FASTQ and FASTA files. NetBSD port maintained by [email protected]. |
| wip/py-eggnog-mapper | NetBSD | 1.0.3 | wip/py-eggnog-mapper 1.0.3: Fast functional annotation of novel DNA or protein sequences. NetBSD port maintained by [email protected]. |
| wip/py-htseq | NetBSD | 2.0.3 | wip/py-htseq 2.0.3: Python library to facilitate programmatic analysis of sequence data. NetBSD port maintained by [email protected]. |
| wip/py-kaleido | NetBSD | 1.0.0rc11 | wip/py-kaleido 1.0.0rc11: Cross-platform library for generating static images for Plotly. NetBSD port maintained by [email protected]. |
| wip/py-multiqc | NetBSD | 1.28 | wip/py-multiqc 1.28: Aggregate bioinformatics analysis reports across samples and tools. NetBSD port maintained by [email protected]. |
| wip/py-orca | NetBSD | 1.8 | wip/py-orca 1.8: Python library for task orchestration. NetBSD port maintained by [email protected]. |
| wip/py-pybigwig | NetBSD | 0.3.22 | wip/py-pybigwig 0.3.22: Python access to bigWig files using libBigWig. NetBSD port maintained by [email protected]. |
| wip/py-pydeseq2 | NetBSD | 0.5.2 | wip/py-pydeseq2 0.5.2: Python implementation of the popular DESeq2 R package. NetBSD port maintained by [email protected]. |
| wip/py-pysam | NetBSD | 0.21.0 | wip/py-pysam 0.21.0: Python module for reading, manipulating and writing genomic data sets. NetBSD port maintained by [email protected]. |
| wip/qmediamanager | NetBSD | 0.1.2 | wip/qmediamanager 0.1.2: GUI tool for managing removable media. NetBSD port maintained by [email protected]. |
| wip/rainbow | NetBSD | 2.0.4 | wip/rainbow 2.0.4: Short reads clustering and local assembly. NetBSD port maintained by [email protected]. |
| wip/readseq | NetBSD | 2.1.19 | wip/readseq 2.1.19: Read and reformat biosequences, Java command-line version. NetBSD port maintained by [email protected]. |
| wip/rna-seq | NetBSD | 1.3.0 | wip/rna-seq 1.3.0: Core tools needed for RNA-Seq analysis. NetBSD port maintained by [email protected]. |
| wip/rna-star | NetBSD | 2.7.11b | wip/rna-star 2.7.11b: Spliced Transcripts Alignment to a Reference. NetBSD port maintained by [email protected]. |
| wip/rsem | NetBSD | 1.2.30 | wip/rsem 1.2.30: RNA-Seq by Expectation-Maximization. NetBSD port maintained by [email protected]. |
| wip/runas | NetBSD | 0.2.0 | wip/runas 0.2.0: Wrapper around su for running a command as another user. NetBSD port maintained by [email protected]. |
| wip/salmon | NetBSD | 0.11.3 | wip/salmon 0.11.3: Transcript-level quantification of RNA-seq from lightweight alignments. NetBSD port maintained by [email protected]. |
| wip/samtools | NetBSD | 1.22 | wip/samtools 1.22: Tools for manipulating sequence alignment maps. NetBSD port maintained by [email protected]. |
| wip/seqtk | NetBSD | 1.4 | wip/seqtk 1.4: Tool for processing sequences in FASTA/FASTQ format. NetBSD port maintained by [email protected]. |
| wip/slclust | NetBSD | 0.0.0.20100202 | wip/slclust 0.0.0.20100202: Single-linkage clustering with Jaccard similarity. NetBSD port maintained by [email protected]. |
| wip/spcm | NetBSD | 0.5.9.13 | wip/spcm 0.5.9.13: Simple, portable cluster management. NetBSD port maintained by [email protected]. |
| wip/sra-tools | NetBSD | 3.2.1nb1 | wip/sra-tools 3.2.1nb1: NCBI's toolkit for handling data in INSDC Sequence Read Archives. NetBSD port maintained by [email protected]. |
| wip/stacks | NetBSD | 2.69 | wip/stacks 2.69: Software pipeline for building loci from short-read sequences. NetBSD port maintained by [email protected]. |
| wip/stringtie | NetBSD | 2.1.1 | wip/stringtie 2.1.1: Transcript assembly and quantification for RNA-seq. NetBSD port maintained by [email protected]. |
| wip/structure | NetBSD | 2.3.4 | wip/structure 2.3.4: Multi-locus genotype data to investigate population structure. NetBSD port maintained by [email protected]. |
| wip/subread | NetBSD | 2.1.0 | wip/subread 2.1.0: High-performance read alignment, quantification and mutation discovery. NetBSD port maintained by [email protected]. |
| wip/tabixpp | NetBSD | 1.0.0.20171116 | wip/tabixpp 1.0.0.20171116: C++ wrapper to tabix indexer. NetBSD port maintained by [email protected]. |
| wip/ti99sim | NetBSD | 0.16.0.17 | wip/ti99sim 0.16.0.17: SDL-based TI-99/4a simulator. NetBSD port maintained by [email protected]. |
| wip/trimadap | NetBSD | 0.1.4 | wip/trimadap 0.1.4: Trim adapter sequences from Illumina data using heuristic rules. NetBSD port maintained by [email protected]. |
| wip/twintk | NetBSD | 0.9.4.34 | wip/twintk 0.9.4.34: Terminal Windows Toolkit. NetBSD port maintained by [email protected]. |
| wip/vcf-split | NetBSD | 0.1.5.19 | wip/vcf-split 0.1.5.19: Split a multi-sample VCF into single-sample VCFs. NetBSD port maintained by [email protected]. |
| wip/vcf2hap | NetBSD | 0.1.6.14 | wip/vcf2hap 0.1.6.14: Generate .hap file from VCF for haplohseq. NetBSD port maintained by [email protected]. |
| wip/vsearch | NetBSD | 2.30.0 | wip/vsearch 2.30.0: Versatile open-source tool for metagenomics. NetBSD port maintained by [email protected]. |
| wip/webbrowser | NetBSD | 0.4.0 | wip/webbrowser 0.4.0: Proxy script for launching "best" available web browser. NetBSD port maintained by [email protected]. |
| wip/wip-tools | NetBSD | 0.1.0.31 | wip/wip-tools 0.1.0.31: Tools for developing wip packages. NetBSD port maintained by [email protected]. |
| www/webbrowser | NetBSD | 0.4.0 | www/webbrowser 0.4.0: Proxy script for launching "best" available web browser. NetBSD port maintained by [email protected]. |
BSD Ports