| benchmarks/iozone | NetBSD | 3.493nb1 | benchmarks/iozone 3.493nb1: Benchmark for file read and write speed. NetBSD port maintained by [email protected]. |
| benchmarks/kttcp | NetBSD | 20020711nb2 | benchmarks/kttcp 20020711nb2: Kernel network throughput benchmark. NetBSD port maintained by [email protected]. |
| benchmarks/libmicro | NetBSD | 0.4.0 | benchmarks/libmicro 0.4.0: Set of utilities to benchmark productivity of system calls. NetBSD port maintained by [email protected]. |
| benchmarks/linpack-bench | NetBSD | 940225 | benchmarks/linpack-bench 940225: Collection of benchmarks for floating point. NetBSD port maintained by [email protected]. |
| benchmarks/lmbench | NetBSD | 2.11anb13 | benchmarks/lmbench 2.11anb13: Complete benchmark that gives a large amount of information. NetBSD port maintained by [email protected]. |
| benchmarks/nbench | NetBSD | 2.2.3 | benchmarks/nbench 2.2.3: Benchmark tool for CPU, FPU and memory. NetBSD port maintained by [email protected]. |
| benchmarks/netio | NetBSD | 1.33 | benchmarks/netio 1.33: Network benchmark for OS/2 2.x, Windows NT/2000 and Unix. NetBSD port maintained by [email protected]. |
| benchmarks/netperf | NetBSD | 2.7.0 | benchmarks/netperf 2.7.0: Rick Jones' network performance benchmarking package. NetBSD port maintained by [email protected]. |
| benchmarks/netpipe | NetBSD | 3.7.1 | benchmarks/netpipe 3.7.1: TCP/PVM/MPI testing and performance measuring tool. NetBSD port maintained by [email protected]. |
| benchmarks/nettest | NetBSD | 92.11.09 | benchmarks/nettest 92.11.09: Performs client and server functions for timing data throughput. NetBSD port maintained by [email protected]. |
| benchmarks/nsieve | NetBSD | 1.2b | benchmarks/nsieve 1.2b: Sieve of Eratosthenes benchmark. NetBSD port maintained by [email protected]. |
| benchmarks/nttcp | NetBSD | 1.47nb2 | benchmarks/nttcp 1.47nb2: New TCP testing and performance measuring tool. NetBSD port maintained by [email protected]. |
| benchmarks/p5-Benchmark-Timer | NetBSD | 0.7112nb10 | benchmarks/p5-Benchmark-Timer 0.7112nb10: Benchmarking with statistical confidence. NetBSD port maintained by [email protected]. |
| benchmarks/p5-Dumbbench | NetBSD | 0.111nb9 | benchmarks/p5-Dumbbench 0.111nb9: More reliable benchmarking with the least amount of thinking. NetBSD port maintained by [email protected]. |
| benchmarks/paranoia | NetBSD | 960101nb1 | benchmarks/paranoia 960101nb1: Highly paranoid test of IEEE 754 conformance. NetBSD port maintained by [email protected]. |
| benchmarks/phoronix-test-suite | NetBSD | 10.8.4nb2 | benchmarks/phoronix-test-suite 10.8.4nb2: Phoronix Benchmarking Suite. NetBSD port maintained by [email protected]. |
| benchmarks/pipebench | NetBSD | 0.40 | benchmarks/pipebench 0.40: Measures the speed of a pipe. NetBSD port maintained by [email protected]. |
| benchmarks/postal | NetBSD | 0.70nb6 | benchmarks/postal 0.70nb6: Tool for benchmarking SMTP/POP servers. NetBSD port maintained by [email protected]. |
| benchmarks/postmark | NetBSD | 1.5 | benchmarks/postmark 1.5: NetApps file system benchmark. NetBSD port maintained by [email protected]. |
| benchmarks/ramspeed | NetBSD | 2.6.0 | benchmarks/ramspeed 2.6.0: RAMspeed, a cache and memory benchmarking tool. NetBSD port maintained by [email protected]. |
| benchmarks/randread | NetBSD | 0.2 | benchmarks/randread 0.2: Program to help benchmark random disk read performance. NetBSD port maintained by [email protected]. |
| benchmarks/ruby-benchmark | NetBSD | 0.5.0 | benchmarks/ruby-benchmark 0.5.0: Performance benchmarking library. NetBSD port maintained by [email protected]. |
| benchmarks/skampi | NetBSD | 5.0.4.355 | benchmarks/skampi 5.0.4.355: MPI (Message Passing Interface) benchmarks. NetBSD port maintained by [email protected]. |
| benchmarks/sysbench | NetBSD | 1.0.20 | benchmarks/sysbench 1.0.20: Modular, cross-platform and multi-threaded benchmark tool. NetBSD port maintained by [email protected]. |
| benchmarks/thrulay | NetBSD | 0.9 | benchmarks/thrulay 0.9: TCP and UDP network capacity tester. NetBSD port maintained by [email protected]. |
| benchmarks/ttcp | NetBSD | 1.12nb3 | benchmarks/ttcp 1.12nb3: TCP testing and performance measuring tool. NetBSD port maintained by [email protected]. |
| benchmarks/ubench | NetBSD | 0.32nb1 | benchmarks/ubench 0.32nb1: The Unix Benchmark utility. NetBSD port maintained by [email protected]. |
| benchmarks/whetstone | NetBSD | 1.2 | benchmarks/whetstone 1.2: Benchmark for processors that gives you a MIPS rating. NetBSD port maintained by [email protected]. |
| benchmarks/xengine | NetBSD | 1.0.1nb4 | benchmarks/xengine 1.0.1nb4: Reciprocating engine for X. NetBSD port maintained by [email protected]. |
| benchmarks/zelibm | NetBSD | 0nb30 | benchmarks/zelibm 0nb30: Visual Math Library Quality Check. NetBSD port maintained by [email protected]. |
| biology/R-popbio | NetBSD | 2.8 | biology/R-popbio 2.8: Construction and Analysis of Matrix Population Models. NetBSD port maintained by [email protected]. |
| biology/ad2vcf | NetBSD | 0.1.6.20 | biology/ad2vcf 0.1.6.20: Add allelic depth info from a SAM stream to a VCF file. NetBSD port maintained by [email protected]. |
| biology/arka | NetBSD | 0.11nb2 | biology/arka 0.11nb2: Graphic interface for the programs from the GP package. NetBSD port maintained by [email protected]. |
| biology/atac-seq | NetBSD | 1.5.0 | biology/atac-seq 1.5.0: Core tools needed for ATAC-Seq analysis. NetBSD port maintained by [email protected]. |
| biology/azara | NetBSD | 2.7nb10 | biology/azara 2.7nb10: Programs to process and view NMR data. NetBSD port maintained by [email protected]. |
| biology/balance-tui | NetBSD | 0.1.2 | biology/balance-tui 0.1.2: Balance chemical equations from the CLI. NetBSD port maintained by [email protected]. |
| biology/bcf-score | NetBSD | 1.20nb1 | biology/bcf-score 1.20nb1: Bcftools plugin for mosaic chromosomal alteration analysis. NetBSD port maintained by [email protected]. |
| biology/bcftools | NetBSD | 1.21 | biology/bcftools 1.21: Tools for manipulating BCF and VCF variant call files. NetBSD port maintained by [email protected]. |
| biology/beagle | NetBSD | 5.2 | biology/beagle 5.2: Phasing genotypes and imputing ungenotyped markers. NetBSD port maintained by [email protected]. |
| biology/bedtools | NetBSD | 2.31.1 | biology/bedtools 2.31.1: Swiss army knife for genome arithmetic. NetBSD port maintained by [email protected]. |
| biology/bio-mocha | NetBSD | 1.20 | biology/bio-mocha 1.20: Bcftools plugin for mosaic chromosomal alteration analysis. NetBSD port maintained by [email protected]. |
| biology/biolibc | NetBSD | 0.2.6.4 | biology/biolibc 0.2.6.4: Low-level high-performance bioinformatics library. NetBSD port maintained by [email protected]. |
| biology/biolibc-tools | NetBSD | 0.1.4.13 | biology/biolibc-tools 0.1.4.13: High-performance bioinformatics tools based on biolibc. NetBSD port maintained by [email protected]. |
| biology/bioperl | NetBSD | 1.7.7nb7 | biology/bioperl 1.7.7nb7: Perl tools for computational molecular biology. NetBSD port maintained by [email protected]. |
| biology/bodr | NetBSD | 9nb26 | biology/bodr 9nb26: Blue Obelisk Data Repository. NetBSD port maintained by [email protected]. |
| biology/bowtie2 | NetBSD | 2.5.4 | biology/bowtie2 2.5.4: Ultrafast, memory-efficient short read aligner. NetBSD port maintained by [email protected]. |
| biology/bwa | NetBSD | 0.7.17nb7 | biology/bwa 0.7.17nb7: Map low-divergent sequences against a large reference genome. NetBSD port maintained by [email protected]. |
| biology/canu | NetBSD | 2.2nb11 | biology/canu 2.2nb11: Single molecule sequence assembler for genomes large and small. NetBSD port maintained by [email protected]. |
| biology/cdhit | NetBSD | 4.8.1nb1 | biology/cdhit 4.8.1nb1: Clustering and comparing protein or nucleotide sequences. NetBSD port maintained by [email protected]. |
| biology/chemtool | NetBSD | 1.6.14nb31 | biology/chemtool 1.6.14nb31: Program for drawing organic molecules. NetBSD port maintained by [email protected]. |
| biology/chip-seq | NetBSD | 1.2 | biology/chip-seq 1.2: Core tools needed for ChIP-Seq analysis. NetBSD port maintained by [email protected]. |
| biology/clustalw | NetBSD | 2.1 | biology/clustalw 2.1: General purpose multiple alignment program for DNA or proteins. NetBSD port maintained by [email protected]. |
| biology/coalesce | NetBSD | 1.5.0.2nb1 | biology/coalesce 1.5.0.2nb1: Estimates effective population size and mutation rate. NetBSD port maintained by [email protected]. |
| biology/coordgenlibs | NetBSD | 1.4.2nb12 | biology/coordgenlibs 1.4.2nb12: 2D coordinate generation for molecules. NetBSD port maintained by [email protected]. |
| biology/fasda | NetBSD | 0.1.5.8 | biology/fasda 0.1.5.8: Fast and simple differential analysis. NetBSD port maintained by [email protected]. |
| biology/fastDNAml | NetBSD | 1.2.2 | biology/fastDNAml 1.2.2: Program derived from Joseph Felsenstein's version 3.3 DNAML. NetBSD port maintained by [email protected]. |
| biology/fastp | NetBSD | 0.22.0 | biology/fastp 0.22.0: Ultra-fast all-in-one FASTQ preprocessor. NetBSD port maintained by [email protected]. |
| biology/fastq-trim | NetBSD | 0.1.3 | biology/fastq-trim 0.1.3: Lightening fast sequence read trimmer. NetBSD port maintained by [email protected]. |
| biology/fastqc | NetBSD | 0.11.9nb2 | biology/fastqc 0.11.9nb2: Quality control tool for high throughput sequence data. NetBSD port maintained by [email protected]. |
| biology/fasttree | NetBSD | 2.1.11 | biology/fasttree 2.1.11: Approximately-maximum-likelihood phylogenetic trees from alignments. NetBSD port maintained by [email protected]. |
| biology/fastx-toolkit | NetBSD | 0.0.14.6nb1 | biology/fastx-toolkit 0.0.14.6nb1: CLI tools for Short-Reads FASTA/FASTQ files preprocessing. NetBSD port maintained by [email protected]. |
| biology/filter-fastq | NetBSD | 0.0.0.20210527nb2 | biology/filter-fastq 0.0.0.20210527nb2: Filter reads from a FASTQ file. NetBSD port maintained by [email protected]. |
| biology/fluctuate | NetBSD | 1.4 | biology/fluctuate 1.4: Estimation of population growth rate. NetBSD port maintained by [email protected]. |
| biology/gabedit | NetBSD | 2.4.8nb26 | biology/gabedit 2.4.8nb26: Graphical User Interface to computational chemistry packages. NetBSD port maintained by [email protected]. |
| biology/generand | NetBSD | 0.1.2.9 | biology/generand 0.1.2.9: Generate random genomic data in FASTA/FASTQ, SAM, or VCF format. NetBSD port maintained by [email protected]. |
| biology/genesplicer | NetBSD | 20030403 | biology/genesplicer 20030403: Computational Method for Splice Site Prediction. NetBSD port maintained by [email protected]. |
| biology/gffread | NetBSD | 0.12.7 | biology/gffread 0.12.7: GFF/GTF format conversions, filtering, FASTA extraction, etc. NetBSD port maintained by [email protected]. |
| biology/glimmer | NetBSD | 2.13nb1 | biology/glimmer 2.13nb1: System for finding genes in microbial DNA. NetBSD port maintained by [email protected]. |
| biology/gp | NetBSD | 0.26 | biology/gp 0.26: Manipulate DNA/RNA sequence in a Unix fashion. NetBSD port maintained by [email protected]. |
| biology/gromacs | NetBSD | 4.5.5nb26 | biology/gromacs 4.5.5nb26: Molecular dynamics package. NetBSD port maintained by [email protected]. |
| biology/hisat2 | NetBSD | 2.2.1nb4 | biology/hisat2 2.2.1nb4: Alignment program for mapping next-generation sequencing reads. NetBSD port maintained by [email protected]. |
| biology/hmmer | NetBSD | 3.0nb1 | biology/hmmer 3.0nb1: Implementation of profile HMM software for protein sequence analysis. NetBSD port maintained by [email protected]. |
| biology/htslib | NetBSD | 1.21nb9 | biology/htslib 1.21nb9: C library for high-throughput sequencing data formats. NetBSD port maintained by [email protected]. |
| biology/igv | NetBSD | 2.9.2 | biology/igv 2.9.2: Visualization tool for genomic datasets. NetBSD port maintained by [email protected]. |
| biology/kallisto | NetBSD | 0.51.1 | biology/kallisto 0.51.1: Quantify abundances of transcripts from RNA-Seq data. NetBSD port maintained by [email protected]. |
| biology/lucy | NetBSD | 1.20 | biology/lucy 1.20: Sequence Cleanup Program. NetBSD port maintained by [email protected]. |
| biology/maeparser | NetBSD | 1.3.2nb3 | biology/maeparser 1.3.2nb3: Parser for Maestro file format. NetBSD port maintained by [email protected]. |
| biology/microsynteny-tools | NetBSD | 0.1.0.175 | biology/microsynteny-tools 0.1.0.175: Tools for exploring microsyntenic differences among species. NetBSD port maintained by [email protected]. |
| biology/miniasm | NetBSD | 0.3 | biology/miniasm 0.3: OLC-based de novo assembler for long reads. NetBSD port maintained by [email protected]. |
| biology/minimap2 | NetBSD | 2.28nb1 | biology/minimap2 2.28nb1: Sequence alignment program for noisy, long reads. NetBSD port maintained by [email protected]. |
| biology/molsketch | NetBSD | 0.8.4nb7 | biology/molsketch 0.8.4nb7: Program for drawing molecular structures. NetBSD port maintained by [email protected]. |
| biology/mopac | NetBSD | 22.0.6nb1 | biology/mopac 22.0.6nb1: Semi-empirical (MNDO, etc.) molecular orbital calculation. NetBSD port maintained by [email protected]. |
| biology/mpqc | NetBSD | 2.3.1nb12 | biology/mpqc 2.3.1nb12: The Massively Parallel Quantum Chemistry Program. NetBSD port maintained by [email protected]. |
| biology/mummer | NetBSD | 3.20nb10 | biology/mummer 3.20nb10: System for aligning whole genome sequences. NetBSD port maintained by [email protected]. |
| biology/ncbi-blast+ | NetBSD | 2.16.0nb4 | biology/ncbi-blast+ 2.16.0nb4: NCBI implementation of Basic Local Alignment Search Tool. NetBSD port maintained by [email protected]. |
| biology/nutsqlite | NetBSD | 2.0.6 | biology/nutsqlite 2.0.6: Record what you eat and analyze your meals. NetBSD port maintained by [email protected]. |
| biology/openbabel | NetBSD | 3.2.1nb2 | biology/openbabel 3.2.1nb2: Chemistry file translation program. NetBSD port maintained by [email protected]. |
| biology/p5-Bio-ASN1-EntrezGene | NetBSD | 1.73nb6 | biology/p5-Bio-ASN1-EntrezGene 1.73nb6: Regular expression-based Perl Parser for NCBI Entrez Gene. NetBSD port maintained by [email protected]. |
| biology/pdbalign | NetBSD | 20030812 | biology/pdbalign 20030812: Prediction of Protein Secondary Structure and Active Sites. NetBSD port maintained by [email protected]. |
| biology/peak-classifier | NetBSD | 0.1.4.21 | biology/peak-classifier 0.1.4.21: Classify ChIP/ATAC-Seq peaks based on features provided in a GFF. NetBSD port maintained by [email protected]. |
| biology/phylip | NetBSD | 3.69 | biology/phylip 3.69: Phylogeny Inference Package. NetBSD port maintained by [email protected]. |
| biology/plink | NetBSD | 1.07nb1 | biology/plink 1.07nb1: Whole-genome association analysis toolset. NetBSD port maintained by [email protected]. |
| biology/plinkseq | NetBSD | 0.08nb19 | biology/plinkseq 0.08nb19: C/C++ library for working with human genetic variation data. NetBSD port maintained by [email protected]. |
| biology/primer3 | NetBSD | 2.3.6 | biology/primer3 2.3.6: Design PCR primers. NetBSD port maintained by [email protected]. |
| biology/profit | NetBSD | 2.2nb1 | biology/profit 2.2nb1: Performs least squares fits of two protein structures. NetBSD port maintained by [email protected]. |
| biology/puzzle | NetBSD | 5.2nb2 | biology/puzzle 5.2nb2: Maximum likelihood analysis of molecular sequence data. NetBSD port maintained by [email protected]. |
| biology/py-bcbio-gff | NetBSD | 0.7.1 | biology/py-bcbio-gff 0.7.1: Read and write Generic Feature Format (GFF) with Biopython integration. NetBSD port maintained by [email protected]. |
| biology/py-biopython | NetBSD | 1.87 | biology/py-biopython 1.87: Python libraries for computational molecular biology. NetBSD port maintained by [email protected]. |
| biology/py-cutadapt | NetBSD | 4.7nb1 | biology/py-cutadapt 4.7nb1: Find and remove adapter sequences, primers, poly-A tails, etc. NetBSD port maintained by [email protected]. |
| biology/py-dna-features-viewer | NetBSD | 3.1.5 | biology/py-dna-features-viewer 3.1.5: Python library to visualize DNA features, e.g. GenBank or Gff files. NetBSD port maintained by [email protected]. |
BSD Ports